GBrowse Details

Vigan.01G113200.01

Basic Information:
Name: Vigan.01G113200.01
Multiple alignment
Variant Information
Position: Chr01:10611072..10614872 (- strand)
Length: 3801
Functional Information:
Description: Similar to 14-3-3 protein. [T2DNM7, Phaseolus vulgaris]
GO: Molecular Function: protein domain specific binding (GO:0019904)
InterPro: 14-3-3 protein (IPR000308)
14-3-3 protein, conserved site (IPR023409)
14-3-3 domain (IPR023410)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:98.55,48.25,118.04,91.88,147.96,214.09,154.52,98.23
Automatic updates:
Name: NM_001354029 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 14-3-3 protein SGF14c (GF14C), transcript variant 6, mRNA.
PubMed ID: 23060368 NCBI(pubmed)
21120521 NCBI(pubmed)
Status: Known Variant
Name: NM_001354030 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 14-3-3 protein SGF14c (GF14C), transcript variant 2, mRNA.
PubMed ID: 23060368 NCBI(pubmed)
21120521 NCBI(pubmed)
Status: Known Variant
Name: NM_001354031 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 14-3-3 protein SGF14c (GF14C), transcript variant 5, mRNA.
PubMed ID: 23060368 NCBI(pubmed)
21120521 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:10611072..10611537 (- strand)
Length: 466
Type: three_prime_UTR
Position: Chr01:10611538..10611587 (- strand)
Length: 50
Type: CDS
Position: Chr01:10612738..10612886 (- strand)
Length: 149
Type: CDS
Position: Chr01:10613008..10613117 (- strand)
Length: 110
Type: CDS
Position: Chr01:10613796..10613883 (- strand)
Length: 88
Type: CDS
Position: Chr01:10613965..10614271 (- strand)
Length: 307
Type: CDS
Position: Chr01:10614480..10614552 (- strand)
Length: 73
Type: CDS
Position: Chr01:10614553..10614872 (- strand)
Length: 320
Type: five_prime_UTR


>Vigan.01G113200.01
TTTTCAAAAA GACAAAAAAA GTGAATTTGA AATTTCAATG CCCACCAAAC GCCAATCAAT TTGCCTCCCT CCCAATCCCA
CGCGCCTACC TCTCCCGTCA CCATCACAGC CTCCCCACTC TTTGCATGAA CACAAACGCG TGACAAACAC TCTCCCTGAT
ACGCGTGCGG AATCGTGATC GCCCACGACC AACCCGTGCC GTCGTGCCCT GTCTCTCCAC AACTAACCCT GCGCTCATCA
ACTTGCAAAC ACTCACAACA CAACACACAC AATTTTCTAG AGAGAGAAAG TGAGAGGAGA GAGAAAGTTG CAGATCCTCC
ATGGCCTCCA CCAAGGAACG CGATAACTTC GTCTACGTTG CCAAGCTCGC CGAACAAGCC GAACGCTATG AAGAAATGGT
GGATGCAATG AAGAATGTGG CGAAGCTAAA CGTGGAACTG ACGGTTGAGG AGCGGAACCT TTTGTCGGTA GGGTACAAGA
ACGTGGTGGG TGCTCGTAGG GCTTCGTGGA GGATTCTTTC GTCGATTGAG CAGAAGGAAG AGGCGAAAGG GAACGATGTG
AGTGTGAAGC GGATAAAGGA GTATAGGCAG AAGGTGGAGT CTGAGTTGTC CAATATCTGC AGTGATATCA TGACTGTTAT
TGATGAGCAC CTTATCCCCT CTAGCACTAC TGGTGAACCT AGTGTCTTTT TCTACAAAAT GAAGGGTGAC TATTACCGGT
ATCTCGCGGA GTTCAAGTCC GGTGAAGAGA GAAAAGAGGC TGCTGATCAT TCCATGAAAG CGTATCAGAC AGCTTCCACT
ACTGCAGAGG CTGAGTTACC TCCTACGCAT CCTATCCGAC TGGGTCTGGC TTTGAACTTC TCTGTCTTTT ATTATGAAAT
TTTGAACTCT CCTGAAAGGG CTTGTCACCT TGCAAAGCAA GCATTTGATG AAGCAATCTC TGAGTTGGAT ACTCTGAGTG
AGGAGTCTTA CAAAGACAGC ACCCTAATTA TGCAGCTTCT GAGGGACAAC CTCACCTTGT GGACTTCTGA CATCCCTGAA
GATGGAGAAG AACAAAAGGT GGATTCTGTC CGAGCTGCTG GTGGTGAAGA GGCATAGGTA GGTTGTCTAC CGTGTAAGCA
AATGATATAG GGTTTTACCT TTTACCTTAA CAAAGTTACA TTTTGCAATG AAGTGAAGCA GGTATTGGCT AGGAATTGGT
GTGCATACGA GAAGGCTAGC CTCTGTCGTG ATAGTTTACA TTTAGGATGT TGCAATAGAG CATGTTGTTG GTCTCTAGAA
AATCACCATA GAGCTTTGTG ATCCTTTTAT TCTATGCGTG TGCTTTCTGT TACTGCAGAC GATTTGCATG GTGTTTCGCT
GTAATCTAGT GAATTGCTTC ATTTTGTTGA CTTCATCTTT CTAAGAGGAT GCTTCCTTGC ATTCTTTTAT CTGTTTACAT
AATATTTATT TAAAATTATG CCAATCATTG TTCCACAAGA AAATTGAATT ATGGACTTCG ATTTCCATCA GATTTCAGGT
TAAAATTTTC TTGGTGTTTG ACCGGAGTTT AACCGTTTAC CAA

>Vigan.01G113200.01
ATGGCCTCCA CCAAGGAACG CGATAACTTC GTCTACGTTG CCAAGCTCGC CGAACAAGCC GAACGCTATG AAGAAATGGT
GGATGCAATG AAGAATGTGG CGAAGCTAAA CGTGGAACTG ACGGTTGAGG AGCGGAACCT TTTGTCGGTA GGGTACAAGA
ACGTGGTGGG TGCTCGTAGG GCTTCGTGGA GGATTCTTTC GTCGATTGAG CAGAAGGAAG AGGCGAAAGG GAACGATGTG
AGTGTGAAGC GGATAAAGGA GTATAGGCAG AAGGTGGAGT CTGAGTTGTC CAATATCTGC AGTGATATCA TGACTGTTAT
TGATGAGCAC CTTATCCCCT CTAGCACTAC TGGTGAACCT AGTGTCTTTT TCTACAAAAT GAAGGGTGAC TATTACCGGT
ATCTCGCGGA GTTCAAGTCC GGTGAAGAGA GAAAAGAGGC TGCTGATCAT TCCATGAAAG CGTATCAGAC AGCTTCCACT
ACTGCAGAGG CTGAGTTACC TCCTACGCAT CCTATCCGAC TGGGTCTGGC TTTGAACTTC TCTGTCTTTT ATTATGAAAT
TTTGAACTCT CCTGAAAGGG CTTGTCACCT TGCAAAGCAA GCATTTGATG AAGCAATCTC TGAGTTGGAT ACTCTGAGTG
AGGAGTCTTA CAAAGACAGC ACCCTAATTA TGCAGCTTCT GAGGGACAAC CTCACCTTGT GGACTTCTGA CATCCCTGAA
GATGGAGAAG AACAAAAGGT GGATTCTGTC CGAGCTGCTG GTGGTGAAGA GGCATAG

>Vigan.01G113200.01
MASTKERDNF VYVAKLAEQA ERYEEMVDAM KNVAKLNVEL TVEERNLLSV GYKNVVGARR ASWRILSSIE QKEEAKGNDV
SVKRIKEYRQ KVESELSNIC SDIMTVIDEH LIPSSTTGEP SVFFYKMKGD YYRYLAEFKS GEERKEAADH SMKAYQTAST
TAEAELPPTH PIRLGLALNF SVFYYEILNS PERACHLAKQ AFDEAISELD TLSEESYKDS TLIMQLLRDN LTLWTSDIPE
DGEEQKVDSV RAAGGEEA*