VIGGS:GBrowse

Vigan.01G114200.01

Basic Information:

Name:	Vigan.01G114200.01 Multiple alignment Variant Information
Position:	Chr01:10717226..10719874 (+ strand)
Length:	2649

Functional Information:

Description:	Similar to uncharacterized protein. [C6T898, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: microtubule-based process (GO:0007017)
	Biological Process: protein polymerization (GO:0051258)
	Cellular Component: microtubule (GO:0005874)
	Cellular Component: protein complex (GO:0043234)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: structural constituent of cytoskeleton (GO:0005200)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Tubulin (IPR000217)
	Alpha tubulin (IPR002452)
	Tubulin/FtsZ, GTPase domain (IPR003008)
	Tubulin/FtsZ, C-terminal (IPR008280)
	Beta tubulin, autoregulation binding site (IPR013838)
	Tubulin, conserved site (IPR017975)
	Tubulin/FtsZ, 2-layer sandwich domain (IPR018316)
	Tubulin, C-terminal (IPR023123)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:58.36,56.38,247.30,126.81,273.65,408.50,215.13,230.32
Arabidopsis thaliana homolog:	AT1G04820.1, AT1G50010.1, AT1G64740.1, AT4G14960.2, AT5G19770.1, AT5G19780.1

Automatic updates:

Name:	NM_001250372 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max tubulin A (LOC732582), mRNA.
PubMed ID:	16307369 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001255949 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max tubulin alpha-3 chain-like (LOC100806907), mRNA.
PubMed ID:	18927222 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:10717226..10717423 (+ strand)
Length:	198
Type:	five_prime_UTR

Position:	Chr01:10717424..10717536 (+ strand)
Length:	113
Type:	CDS

Position:	Chr01:10717621..10717835 (+ strand)
Length:	215
Type:	CDS

Position:	Chr01:10717909..10718617 (+ strand)
Length:	709
Type:	CDS

Position:	Chr01:10719110..10719422 (+ strand)
Length:	313
Type:	CDS

Position:	Chr01:10719423..10719874 (+ strand)
Length:	452
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G114200.01
TCGGATAGGC TGGCGGCAAA CGGAGAGTGA AGAGACCCGG ATTCTAAACG TTTATCAAAT CCCATTTTTA AGGGTCATAT
TTGTAAACAC ATACTCACAC ACACCTTCTC AAATCTCAAA TCCCTAACCC TCCCTCTCTT CTTTCTTCTT CTTCCCATTC
TTCCCAGCAG CCCAAAGCCA CCCCATCCAA ATCCCAAAAT GAGAGAAATC ATCAGCATTC ACATCGGTCA GGCCGGGATC
CAGGTCGGAA ACTCTTGCTG GGAACTCTAC TGTCTTGAAC ATGGCATTCA GCCCGATGGC ATGATGCCAA GTGACACCTC
CTTCGGAGTC GCACACGACG CCTTCAACAC CTTCTTCAGC GAAACCGGAT CCGGCAAGCA TGTCCCGCGC GCTGTCTTTG
TCGATCTTGA ACCCACTGTC ATCGATGAAG TCCGATGCGG CGCCTATCGC CAACTCTTCC ACCCTGAACA ACTCATCTCC
GGCAAGGAAG ATGCCGCCAA CAACTTTGCC AGAGGCCACT ACACCGTTGG CAAAGAGATC GTAGATCTGT GCCTCGACCG
TGTCCGCAAG CTCGCCGACA ACTGTACCGG TCTCCAGGGC TTCCTTGTCT TCAATGCCGT CGGCGGAGGA ACCGGTTCCG
GTCTTGGATC CCTCCTGTTG GAGCGTCTCT CCGTGGACTA CGGCAAAAAG TCTAAACTAG GGTTCACCAT TTATCCTTCC
CCTCAGGTTT CAACCGCCGT CGTTGAACCC TACAACAGCG TCCTCTCCAC CCACTCCCTC CTGGAGCACA CCGACGTGGC
TGTCCTGTTG GACAATGAAG CCATCTACGA CATCTGCAGG AGATCCCTCG ACATCGAGAG ACCCACTTAC ACCAACCTGA
ACCGCCTCAT CTCTCAGATC ATTTCTTCCT TGACCACCTC CCTCAGGTTC GATGGCGCCA TCAATGTCGA CATCACTGAG
TTCCAGACCA ACCTTGTGCC TTACCCTCGC ATCCATTTCA TGCTCTCGTC CTATGCTCCG GTTATCTCTG CTGCCAAGGC
CTACCATGAG CAATTGTCCG TGCCCGAGAT CACCAATGCC GTGTTTGAGC CTGCCAGCAT GATGGCCAAG TGTGATCCCA
GACACGGGAA GTACATGGCT TGCTGCTTGA TGTACCGTGG TGATGTTGTT CCCAAGGATG TCAATGCTGC AGTTGCTACC
ATCAAGACTA AGAGGACTGT GCAGTTTGTT GATTGGTGTC CTACTGGATT CAAGTGTGGT ATCAACTACC AACCTCCTTC
TGTTGTTCCT GGTGGTGACC TTGCTAAGGT GCAGCGCGCC GTATGCATGA TCAGCAACAA CACTGCGGTT GCTGAGGTGT
TCTCTCGCAT TGATCACAAG TTTGATCTGA TGTACGCCAA GAGGGCCTTT GTGCACTGGT ATGTTGGCGA GGGTATGGAG
GAAGGTGAGT TCTCCGAGGC TCGGGAGGAT CTGGCTGCTC TTGAGAAGGA CTATGAAGAG GTTGGGGCTG AAGGAGCGGA
AGATGAGGAG GAACCGGAGG ATTATTGATA ATTTAAGGTG TTACGACTGT AATTGTTTCG AGTAAAAGGG TATATGCTTC
GTTACATTGC CCTGCACCCG TACTGTTCGT TCTTTTTTGT TTTTATTCCT GTGTGATATA GTTCATTCAA AACTGTGAAG
TGGTCGATCG TCATTACGCT TCTATTTGGT GATTTAGGAT TCTGTTGTTT GAGACATCAA TCATGTATTC TGATCTGCCA
TGTCAAAATT TGATTTCTTA TGTTTTTGTT CGCTATTTTT ATCTGGTTTC CGTATTGATA ACATAATGAA AATCAGGCTG
AACATATCCT TCTGGAAATC ATGTGACTAA GTTGCAGATT TCTGGGCGGT TGTTCGAAAG GTTTTAATAG TCAGAGTCCG
GTTGGTTTAA GTTTGGTGCA AGTGCCAAAA ATTCTCGAGA CTTGTGAATG AAATAAATAA TAAAATTACT GAGATCATGG

[show][hide][copy]CDS

>Vigan.01G114200.01
ATGAGAGAAA TCATCAGCAT TCACATCGGT CAGGCCGGGA TCCAGGTCGG AAACTCTTGC TGGGAACTCT ACTGTCTTGA
ACATGGCATT CAGCCCGATG GCATGATGCC AAGTGACACC TCCTTCGGAG TCGCACACGA CGCCTTCAAC ACCTTCTTCA
GCGAAACCGG ATCCGGCAAG CATGTCCCGC GCGCTGTCTT TGTCGATCTT GAACCCACTG TCATCGATGA AGTCCGATGC
GGCGCCTATC GCCAACTCTT CCACCCTGAA CAACTCATCT CCGGCAAGGA AGATGCCGCC AACAACTTTG CCAGAGGCCA
CTACACCGTT GGCAAAGAGA TCGTAGATCT GTGCCTCGAC CGTGTCCGCA AGCTCGCCGA CAACTGTACC GGTCTCCAGG
GCTTCCTTGT CTTCAATGCC GTCGGCGGAG GAACCGGTTC CGGTCTTGGA TCCCTCCTGT TGGAGCGTCT CTCCGTGGAC
TACGGCAAAA AGTCTAAACT AGGGTTCACC ATTTATCCTT CCCCTCAGGT TTCAACCGCC GTCGTTGAAC CCTACAACAG
CGTCCTCTCC ACCCACTCCC TCCTGGAGCA CACCGACGTG GCTGTCCTGT TGGACAATGA AGCCATCTAC GACATCTGCA
GGAGATCCCT CGACATCGAG AGACCCACTT ACACCAACCT GAACCGCCTC ATCTCTCAGA TCATTTCTTC CTTGACCACC
TCCCTCAGGT TCGATGGCGC CATCAATGTC GACATCACTG AGTTCCAGAC CAACCTTGTG CCTTACCCTC GCATCCATTT
CATGCTCTCG TCCTATGCTC CGGTTATCTC TGCTGCCAAG GCCTACCATG AGCAATTGTC CGTGCCCGAG ATCACCAATG
CCGTGTTTGA GCCTGCCAGC ATGATGGCCA AGTGTGATCC CAGACACGGG AAGTACATGG CTTGCTGCTT GATGTACCGT
GGTGATGTTG TTCCCAAGGA TGTCAATGCT GCAGTTGCTA CCATCAAGAC TAAGAGGACT GTGCAGTTTG TTGATTGGTG
TCCTACTGGA TTCAAGTGTG GTATCAACTA CCAACCTCCT TCTGTTGTTC CTGGTGGTGA CCTTGCTAAG GTGCAGCGCG
CCGTATGCAT GATCAGCAAC AACACTGCGG TTGCTGAGGT GTTCTCTCGC ATTGATCACA AGTTTGATCT GATGTACGCC
AAGAGGGCCT TTGTGCACTG GTATGTTGGC GAGGGTATGG AGGAAGGTGA GTTCTCCGAG GCTCGGGAGG ATCTGGCTGC
TCTTGAGAAG GACTATGAAG AGGTTGGGGC TGAAGGAGCG GAAGATGAGG AGGAACCGGA GGATTATTGA

[show][hide][copy]PROTEIN

>Vigan.01G114200.01
MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT SFGVAHDAFN TFFSETGSGK HVPRAVFVDL EPTVIDEVRC
GAYRQLFHPE QLISGKEDAA NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD
YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT
SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS MMAKCDPRHG KYMACCLMYR
GDVVPKDVNA AVATIKTKRT VQFVDWCPTG FKCGINYQPP SVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGA EDEEEPEDY*