GBrowse Details

Vigan.01G116800.01

Basic Information:
Name: Vigan.01G116800.01
Multiple alignment
Variant Information
Position: Chr01:11151132..11155524 (+ strand)
Length: 4393
Functional Information:
Description: Similar to constitutive photomorphogenesis protein 10-like. [XP_004504327.1, Cicer arietinum]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:39.95,30.14,20.62,29.23,22.76,29.36,21.88,16.98
Arabidopsis thaliana homolog: AT3G13550.1
Automatic updates:
Name: NM_001249342 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max constitutive photomorphogenesis protein 10 (COP10), mRNA.
PubMed ID: 11877375 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:11151132..11151336 (+ strand)
Length: 205
Type: five_prime_UTR
Position: Chr01:11151337..11151538 (+ strand)
Length: 202
Type: CDS
Position: Chr01:11151633..11151706 (+ strand)
Length: 74
Type: CDS
Position: Chr01:11154503..11154650 (+ strand)
Length: 148
Type: CDS
Position: Chr01:11155243..11155340 (+ strand)
Length: 98
Type: CDS
Position: Chr01:11155341..11155524 (+ strand)
Length: 184
Type: three_prime_UTR


>Vigan.01G116800.01
CTTGTTACAT TATTATGATA TAAAAGTATA GTAACTGGCA TCATATTAAT CCAAATAACA TTGGAGTTGA AATTCTTGAG
ATAAAAATGT AGTGCTAGTG GGAAGCAAAA GATGGGAGAG GATGAAATGA AACACTCTGG TCCTTGGTTG TGGAAAGTTT
GAAGAAGAAG AAAATTGTCG AGTTTGTTTG GGGTTTGAGA GATTGATGAT GATATCAGGA GGGGGAGGAA AATCATCGTG
GAGTTCTTCA ACATCGTCAT GGATACCCAC AACCTCCGTG TCGGCTTCAG GAAAGAGGAT TCAGAGGGAA ATGGTGGAAC
TCAACAACGA CCCTCCTCCC GATTGCTCCG CTGGCCCTAA GGGCGATAAC CTATATCACT GGATTGCCAC CATTATTGGA
ACCCCAGGAA CACCCTACCA AGGTGGAATC TTTTTCCTTG ACATCAAATT TCCTAGTGAT TATCCCTTCA AGCCTCCCCA
GGTGGTATTC AAAACACGCA TTTACCACTG CAATGTAGAC CCTGACGGCC TTGTAAGTAT GGGAATATTG AAGGATGATT
GGAGTCCAGC ACTAACAATT ACTAAGGTGC TACGAGAAGT TAGATCAATT TTCACAAATC CTGATCATTA TAATGCTGTT
GTCCCTGGCA TTGCTCACTT GTATTCGGGA GACAGAGCAA AACATGATGG TATTGCTGCA GAGTGGACTG TTCGATTTGC
CAAGTGAATG TAACTGTCCT TTTATTAACT TACATCTTAT GCAGTGTTCC AGTATTTATG TAAATGAGAA TGATAGTTTA
TAATTCAATA GTAACTCCTA CTTGCTCGTT CTTCAAGATA GTGCCTTAGT TGATTCTTCA ATAATTGTAC CTGGATAATG
GTTATTTATC ATCACATGTT TTTAATTGTT T

>Vigan.01G116800.01
ATGATGATAT CAGGAGGGGG AGGAAAATCA TCGTGGAGTT CTTCAACATC GTCATGGATA CCCACAACCT CCGTGTCGGC
TTCAGGAAAG AGGATTCAGA GGGAAATGGT GGAACTCAAC AACGACCCTC CTCCCGATTG CTCCGCTGGC CCTAAGGGCG
ATAACCTATA TCACTGGATT GCCACCATTA TTGGAACCCC AGGAACACCC TACCAAGGTG GAATCTTTTT CCTTGACATC
AAATTTCCTA GTGATTATCC CTTCAAGCCT CCCCAGGTGG TATTCAAAAC ACGCATTTAC CACTGCAATG TAGACCCTGA
CGGCCTTGTA AGTATGGGAA TATTGAAGGA TGATTGGAGT CCAGCACTAA CAATTACTAA GGTGCTACGA GAAGTTAGAT
CAATTTTCAC AAATCCTGAT CATTATAATG CTGTTGTCCC TGGCATTGCT CACTTGTATT CGGGAGACAG AGCAAAACAT
GATGGTATTG CTGCAGAGTG GACTGTTCGA TTTGCCAAGT GA

>Vigan.01G116800.01
MMISGGGGKS SWSSSTSSWI PTTSVSASGK RIQREMVELN NDPPPDCSAG PKGDNLYHWI ATIIGTPGTP YQGGIFFLDI
KFPSDYPFKP PQVVFKTRIY HCNVDPDGLV SMGILKDDWS PALTITKVLR EVRSIFTNPD HYNAVVPGIA HLYSGDRAKH
DGIAAEWTVR FAK*