GBrowse Details

Vigan.01G120500.01

Basic Information:
Name: Vigan.01G120500.01
Multiple alignment
Variant Information
Position: Chr01:11759555..11762774 (+ strand)
Length: 3220
Functional Information:
Description: Similar to Drought-responsive family protein. [XP_007025553.1, Theobroma cacao]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Drought induced 19 protein-like, zinc-binding domain (IPR008598)
TRAF-like (IPR008974)
Protein dehydration-induced 19, C-terminal (IPR027935)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:227.86,104.17,17.74,25.02,14.65,18.81,43.18,19.80
Automatic updates:
Name: NM_001281957 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein DEHYDRATION-INDUCED 19-like (LOC100812399), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:11759555..11759914 (+ strand)
Length: 360
Type: five_prime_UTR
Position: Chr01:11759915..11759999 (+ strand)
Length: 85
Type: CDS
Position: Chr01:11760115..11760254 (+ strand)
Length: 140
Type: CDS
Position: Chr01:11761548..11761625 (+ strand)
Length: 78
Type: CDS
Position: Chr01:11761736..11762025 (+ strand)
Length: 290
Type: CDS
Position: Chr01:11762363..11762471 (+ strand)
Length: 109
Type: CDS
Position: Chr01:11762472..11762774 (+ strand)
Length: 303
Type: three_prime_UTR


>Vigan.01G120500.01
AAATAAGAAA GGAAAAAAAA TCAAAGGTGT GTATATCTTA AGATAAACTC TGACATCTCT GCTCCTTTGT TTAATCTCAA
GTTTGATGCT AACCACAAAA CAAAACGCAC CTTACTCCAT TACAGTCGGC GATTCTGAAA CTCTTAGAAA AAGTCAAATC
ATTTTCGGAG AACGATATTA AACTCTTATT TTTATTTTTA TTTTTTTTCT CTACACTTAG GACCTGAGAT CACGTTGCAT
CTCAAAATAT TTTCATTCAT TAGAGAGGGA AAAAAAGTGT TCGTTGAATC TGTTGAAGGT GGTGATTTGA TTTGAATTTT
TTACATAACC CATTTATCAA TTCATCTCTT CGATCTTTCA ATGGATTCTG ACTTCTGGAC CTCGCGTCTT GCCGCCGCTA
AACGCCAATA CACGCTTCAG CATCACCATC AGAATTCTCA TTTAGATCGG TTGGGAATCG ATGATTTTGA TGTGGAAGAA
GAGGTGCGAC CCGATTTCCC TTGCCCCTAT TGCTATGAAG ACTTTGACAT CGCGTCTTTG TGTTCTCATC TTGAAGACGA
ACATTCTTGC GAAGCCAGAG TCACGATTTG TCCTGTATGC TCTGTTAAAG TTGCAAGGGA CATGTTAAGT CACATAACGC
TGCAACACGG GCACTTATTC AAGGTACAGA GAAGACGCAG GTTAAGAAGA GTTGCTATTC CAAACAGTCA GACACTGTCT
CTCTTGGGTC GAGATCTTCG TGAGGCTCAT CTACAGGTGC TTCTTGGTGG TGCTGGCGGA GGATACCGGT CAAACAGTGC
AGCAGTGTCT AATGTTGCTA CTGATCCCTT TCTATCCTCA TTTATTTTGA ATTTCCCAGC CTGTGAAGCA GAAGAGATTT
CAAAATCTGT GGTGACAACT GCTGAGGATT CTTCTGCAAA AAATGTGACA CCTGAACACA TTTGGAAGTC AAGTTTTGAT
CCCTCCTTGA GCAGCGAAGA GCGGGAGAAA AGGATGAGAC AAGCTGCTGG GAGATCTGGT TTTGTGCAGG ACTTGTTTCT
TTCAACTTTG TTAGGCGACT AATGAAAGGT GTAAGATGGT TCGAGAAGAA TAATGAACAT GAGATCCATG GTTAAGGATC
TTGAATGAAG GATACCTTTA GTGGGATCAG TGGTTGTTTG ACAATCCATG TTAGCCTGAT TGGTATATTA TCTAAGTGGC
ACCTTTCACA CAGCGCCGAA TCTGATCATA TTTTCCATTT TATCCCACCC TTGTAAGTTG TAAGCATCTT CACTGGAGAT
GTATTACTCT AAAAAATGTT TTATAGCTTA TGGAAAGACT TATTTTGTTA TATTGCTATT TATAATTAAT TCACTTGACT
CAGAA

>Vigan.01G120500.01
ATGGATTCTG ACTTCTGGAC CTCGCGTCTT GCCGCCGCTA AACGCCAATA CACGCTTCAG CATCACCATC AGAATTCTCA
TTTAGATCGG TTGGGAATCG ATGATTTTGA TGTGGAAGAA GAGGTGCGAC CCGATTTCCC TTGCCCCTAT TGCTATGAAG
ACTTTGACAT CGCGTCTTTG TGTTCTCATC TTGAAGACGA ACATTCTTGC GAAGCCAGAG TCACGATTTG TCCTGTATGC
TCTGTTAAAG TTGCAAGGGA CATGTTAAGT CACATAACGC TGCAACACGG GCACTTATTC AAGGTACAGA GAAGACGCAG
GTTAAGAAGA GTTGCTATTC CAAACAGTCA GACACTGTCT CTCTTGGGTC GAGATCTTCG TGAGGCTCAT CTACAGGTGC
TTCTTGGTGG TGCTGGCGGA GGATACCGGT CAAACAGTGC AGCAGTGTCT AATGTTGCTA CTGATCCCTT TCTATCCTCA
TTTATTTTGA ATTTCCCAGC CTGTGAAGCA GAAGAGATTT CAAAATCTGT GGTGACAACT GCTGAGGATT CTTCTGCAAA
AAATGTGACA CCTGAACACA TTTGGAAGTC AAGTTTTGAT CCCTCCTTGA GCAGCGAAGA GCGGGAGAAA AGGATGAGAC
AAGCTGCTGG GAGATCTGGT TTTGTGCAGG ACTTGTTTCT TTCAACTTTG TTAGGCGACT AA

>Vigan.01G120500.01
MDSDFWTSRL AAAKRQYTLQ HHHQNSHLDR LGIDDFDVEE EVRPDFPCPY CYEDFDIASL CSHLEDEHSC EARVTICPVC
SVKVARDMLS HITLQHGHLF KVQRRRRLRR VAIPNSQTLS LLGRDLREAH LQVLLGGAGG GYRSNSAAVS NVATDPFLSS
FILNFPACEA EEISKSVVTT AEDSSAKNVT PEHIWKSSFD PSLSSEEREK RMRQAAGRSG FVQDLFLSTL LGD*