VIGGS:GBrowse

Vigan.01G123500.01

Basic Information:

Name:	Vigan.01G123500.01 Multiple alignment Variant Information
Position:	Chr01:12147908..12149820 (+ strand)
Length:	1913

Functional Information:

Description:	Similar to 30S ribosomal protein S5. [T2DNP8, Phaseolus vulgaris]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: ribosome (GO:0005840)
	Cellular Component: small ribosomal subunit (GO:0015935)
	Molecular Function: RNA binding (GO:0003723)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein S5 (IPR000851)
	Ribosomal protein S5, C-terminal (IPR005324)
	Ribosomal protein S5, bacterial-type (IPR005712)
	Ribosomal protein S5, N-terminal (IPR013810)
	Double-stranded RNA-binding domain (IPR014720)
	Ribosomal protein S5 domain 2-type fold, subgroup (IPR014721)
	Ribosomal protein S5, N-terminal, conserved site (IPR018192)
	Ribosomal protein S5 domain 2-type fold (IPR020568)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:238.40,90.01,35.47,103.78,14.16,97.17,9.08,21.04
Arabidopsis thaliana homolog:	AT2G33800.1

Automatic updates:

Name:	NM_001361105 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 30S ribosomal protein S5 (LOC100787105), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:12147908..12147979 (+ strand)
Length:	72
Type:	five_prime_UTR

Position:	Chr01:12147980..12148635 (+ strand)
Length:	656
Type:	CDS

Position:	Chr01:12149258..12149507 (+ strand)
Length:	250
Type:	CDS

Position:	Chr01:12149508..12149820 (+ strand)
Length:	313
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G123500.01
GTTAATTTCT TCACAAACAT ATGTTGTTGC TCTGAGTGTT GTTGAGGATC AGGATAAGCT TTCCCTGTTT CCATGGCCGC
ACCTTCGCTT TCCTCCGCTC TCAATTCCCT CTCCCTCTCC ACCTCTTCCC GCTTCTCTCT CCTCCCTTCG CCGCCGCACA
CCGTCTCCCT CCTCTTCGCC AAACCCCAAC ACCACCCCTC CCTCCTCTGC GCCAAATGCA AACCCTCCGA TGACATCGAC
ACCTCCTTCT TCGACAACGT CAACCCATTG GAAGACATTG ACTTCAACCC CCCGGAGCCC CCGGAGGGAT TTGTCGCCCC
TCCCTCCTTC GACGATGGCC CCCTCGAGAC GGAGGACGAG ATCGCCGCAG CCTATGAGGA GCTCTACGGC CCCGCCTTCA
GCGGCGTCTC CGTGCTCGGG AACGACGTCT TCGAAACGGA CGCCCTGGTG AAGCAGGACA CGGGGTTCGG GTCCGGCACG
AAGAAGGAGA AGGTCCGCGA CGGGTTCGAA GAGAGGGTGG TCCAGGTGAG GAGGGTGACG AAGGTTGTTA AGGGAGGGAA
ACAGTTGCGC TTCAGAGCTG TCGTCATTGT CGGCGACAAG AAGGGCCAAG TCGGCGTCGG AGTTGGCAAG GCCAAGGAAG
TCGTCGCCGC CGTTCAGAAG TCCGCCTCCA ATGCCAGGAG AAACATCGTG AAGGTGCCAA TGACTAAGTA CTCCACTTTT
CCCCACAGAT CTGATGGAGA TTATGGAGCA GCGAAGGTGA TGCTTAGACC TGCTTCTCCC GGTACTGGAG TTATTGCAGG
TGGGGCTGTG AGAATTGTTC TTGAAATGGC GGGAGTTGAG AATGCTTTGG GAAAGCAACT AGGGAGTAAT AATGCACTCA
ACAATGCCAG AGCAACCGTT ATTGCTGTGC AGAAAATGAA GCAGTTTCGA GAGGTTGCTG AGGAGCGTGG TATTCCCATG
GAAGAATTAT GGAAGTAATG GATTTCAATC TTTGTGAAGC CGATGTAACT TCTAGATTTC AATCTTTGTG ATATAGAGCT
GGTCATAGTT CTTGTCAAGG AAGTGAAACA CTGTTCAATT TTTTTAATGT TTTCTGAAAA TGAATAGTTT CTTCAAAAAA
GAGCTACTCG TTCTGATTGA TTAATATATT CTTTACCTTC TGCCTGTTTG ATTTGTCCAA CTTATGGTTG GCTTCACCCT
GGTTGAGGAC TTCGATTGTT CTTCTCAGGG TTCAAAGCTT GAAAAGCTTA CATGCTTATG TTCTAGATAC AACTAATGCA
ATTAAATTGA T

[show][hide][copy]CDS

>Vigan.01G123500.01
ATGGCCGCAC CTTCGCTTTC CTCCGCTCTC AATTCCCTCT CCCTCTCCAC CTCTTCCCGC TTCTCTCTCC TCCCTTCGCC
GCCGCACACC GTCTCCCTCC TCTTCGCCAA ACCCCAACAC CACCCCTCCC TCCTCTGCGC CAAATGCAAA CCCTCCGATG
ACATCGACAC CTCCTTCTTC GACAACGTCA ACCCATTGGA AGACATTGAC TTCAACCCCC CGGAGCCCCC GGAGGGATTT
GTCGCCCCTC CCTCCTTCGA CGATGGCCCC CTCGAGACGG AGGACGAGAT CGCCGCAGCC TATGAGGAGC TCTACGGCCC
CGCCTTCAGC GGCGTCTCCG TGCTCGGGAA CGACGTCTTC GAAACGGACG CCCTGGTGAA GCAGGACACG GGGTTCGGGT
CCGGCACGAA GAAGGAGAAG GTCCGCGACG GGTTCGAAGA GAGGGTGGTC CAGGTGAGGA GGGTGACGAA GGTTGTTAAG
GGAGGGAAAC AGTTGCGCTT CAGAGCTGTC GTCATTGTCG GCGACAAGAA GGGCCAAGTC GGCGTCGGAG TTGGCAAGGC
CAAGGAAGTC GTCGCCGCCG TTCAGAAGTC CGCCTCCAAT GCCAGGAGAA ACATCGTGAA GGTGCCAATG ACTAAGTACT
CCACTTTTCC CCACAGATCT GATGGAGATT ATGGAGCAGC GAAGGTGATG CTTAGACCTG CTTCTCCCGG TACTGGAGTT
ATTGCAGGTG GGGCTGTGAG AATTGTTCTT GAAATGGCGG GAGTTGAGAA TGCTTTGGGA AAGCAACTAG GGAGTAATAA
TGCACTCAAC AATGCCAGAG CAACCGTTAT TGCTGTGCAG AAAATGAAGC AGTTTCGAGA GGTTGCTGAG GAGCGTGGTA
TTCCCATGGA AGAATTATGG AAGTAA

[show][hide][copy]PROTEIN

>Vigan.01G123500.01
MAAPSLSSAL NSLSLSTSSR FSLLPSPPHT VSLLFAKPQH HPSLLCAKCK PSDDIDTSFF DNVNPLEDID FNPPEPPEGF
VAPPSFDDGP LETEDEIAAA YEELYGPAFS GVSVLGNDVF ETDALVKQDT GFGSGTKKEK VRDGFEERVV QVRRVTKVVK
GGKQLRFRAV VIVGDKKGQV GVGVGKAKEV VAAVQKSASN ARRNIVKVPM TKYSTFPHRS DGDYGAAKVM LRPASPGTGV
IAGGAVRIVL EMAGVENALG KQLGSNNALN NARATVIAVQ KMKQFREVAE ERGIPMEELW K*