VIGGS:GBrowse

Vigan.01G126200.01

Basic Information:

Name:	Vigan.01G126200.01 Multiple alignment Variant Information
Position:	Chr01:12497540..12499422 (+ strand)
Length:	1883

Functional Information:

Description:	Similar to Uncharacterized protein. [I1J7X9, Glycine max]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Cellular Component: nucleus (GO:0005634)
	Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
	Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro:	Heat shock factor (HSF)-type, DNA-binding (IPR000232)
	Winged helix-turn-helix DNA-binding domain (IPR011991)
	Heat shock transcription factor family (IPR027725)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.65,0.11,0.79,0.00,1.20,0.00

Automatic updates:

Name:	NM_001353461 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max heat stress transcription factor 27 (HSF-27), mRNA.
PubMed ID:	25416131 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:12497540..12497591 (+ strand)
Length:	52
Type:	five_prime_UTR

Position:	Chr01:12497592..12497897 (+ strand)
Length:	306
Type:	CDS

Position:	Chr01:12499056..12499385 (+ strand)
Length:	330
Type:	CDS

Position:	Chr01:12499386..12499422 (+ strand)
Length:	37
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G126200.01
AAATGAATAG GTAATCATAG AGTTAGACTT GTGCACAATA ACATAAACAA GCATGGTTGA TAACAGTGTG TTAGAGCTGA
ACCTTGGTTT AGGTAACAAC AACAACAATA ACAACGTTGT TGGTGGTCAT GCACATGCAG GACAGTCACC GAGGCAAAGG
TGTCCGGCAC CATTTCTGTT GAAGACGTAC GATCTGTTGG AAGAAGGTGA GAGTGAAGAT ATGACAAGAA TAGTGTCGTG
GAATGAAGAA GGAAGTGCCT TTGTTGTGTG GTCTCCTGCA GAATTCTCTG AGCACACCTT GCCTAGATAT TTCAAGCACA
ACAACTTCTC TAGCTTCATT CGCCAATTGA ACACTTATGG ATTTAAGAAA ATGTCATCGA AAAGATGGGA ATTCAAACAC
GAGAAATTTC AGAGGGGTTG CAGGCACATG CTAGGTGAAA TCACAAGGAA AAAGTGCGAG CCAAGTGTTT TTCCTGCATA
CCTTAAGTCT TCTTCTGAGG AAAATGCAAC GAGTTCCACA GAAGAAAACA ATCAGCAACT TCTTATGGAG GAGAACAAGA
ACCTTAAGAA GGAGAGATTA GAGCTTCAAA TGCAGATTGA TGAATGCAAA GCACTTGAAA TGAAGTTGCT CGCATGCCTC
TCTCAGTTTA TGGACACCCA ACAAACTAAA ATTAGGAGAC TTTGTTAATT CATATGGTTA TAATTAATAG GTCTTTATGT
TACCA

[show][hide][copy]CDS

>Vigan.01G126200.01
ATGGTTGATA ACAGTGTGTT AGAGCTGAAC CTTGGTTTAG GTAACAACAA CAACAATAAC AACGTTGTTG GTGGTCATGC
ACATGCAGGA CAGTCACCGA GGCAAAGGTG TCCGGCACCA TTTCTGTTGA AGACGTACGA TCTGTTGGAA GAAGGTGAGA
GTGAAGATAT GACAAGAATA GTGTCGTGGA ATGAAGAAGG AAGTGCCTTT GTTGTGTGGT CTCCTGCAGA ATTCTCTGAG
CACACCTTGC CTAGATATTT CAAGCACAAC AACTTCTCTA GCTTCATTCG CCAATTGAAC ACTTATGGAT TTAAGAAAAT
GTCATCGAAA AGATGGGAAT TCAAACACGA GAAATTTCAG AGGGGTTGCA GGCACATGCT AGGTGAAATC ACAAGGAAAA
AGTGCGAGCC AAGTGTTTTT CCTGCATACC TTAAGTCTTC TTCTGAGGAA AATGCAACGA GTTCCACAGA AGAAAACAAT
CAGCAACTTC TTATGGAGGA GAACAAGAAC CTTAAGAAGG AGAGATTAGA GCTTCAAATG CAGATTGATG AATGCAAAGC
ACTTGAAATG AAGTTGCTCG CATGCCTCTC TCAGTTTATG GACACCCAAC AAACTAAAAT TAGGAGACTT TGTTAA

[show][hide][copy]PROTEIN

>Vigan.01G126200.01
MVDNSVLELN LGLGNNNNNN NVVGGHAHAG QSPRQRCPAP FLLKTYDLLE EGESEDMTRI VSWNEEGSAF VVWSPAEFSE
HTLPRYFKHN NFSSFIRQLN TYGFKKMSSK RWEFKHEKFQ RGCRHMLGEI TRKKCEPSVF PAYLKSSSEE NATSSTEENN
QQLLMEENKN LKKERLELQM QIDECKALEM KLLACLSQFM DTQQTKIRRL C*