VIGGS:GBrowse

Vigan.01G134400.01

Basic Information:

Name:	Vigan.01G134400.01 Multiple alignment Variant Information
Position:	Chr01:13673770..13677251 (+ strand)
Length:	3482

Functional Information:

Description:	Similar to Uncharacterized protein. [I1KQQ8, Glycine max]
GO:	Biological Process: transport (GO:0006810)
	Biological Process: transmembrane transport (GO:0055085)
	Cellular Component: membrane (GO:0016020)
	Cellular Component: integral to membrane (GO:0016021)
	Molecular Function: transporter activity (GO:0005215)
	Molecular Function: transmembrane transporter activity (GO:0022857)
	Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891)
InterPro:	Sugar/inositol transporter (IPR003663)
	General substrate transporter (IPR005828)
	Sugar transporter, conserved site (IPR005829)
	Major facilitator superfamily domain, general substrate transporter (IPR016196)
	Major facilitator superfamily domain (IPR020846)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:112.20,16.97,25.93,16.44,45.63,201.94,86.11,28.98
Arabidopsis thaliana homolog:	AT1G11260.1, AT1G50310.1, AT3G19930.1, AT3G19940.1, AT4G02050.1, AT4G21480.1, AT5G23270.1, AT5G26340.1

Automatic updates:

Name:	NM_001251007 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max monosaccharide transporter (STP1), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:13673770..13673863 (+ strand)
Length:	94
Type:	five_prime_UTR

Position:	Chr01:13673864..13673996 (+ strand)
Length:	133
Type:	CDS

Position:	Chr01:13674119..13674441 (+ strand)
Length:	323
Type:	CDS

Position:	Chr01:13675661..13676290 (+ strand)
Length:	630
Type:	CDS

Position:	Chr01:13676406..13676870 (+ strand)
Length:	465
Type:	CDS

Position:	Chr01:13676871..13677251 (+ strand)
Length:	381
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G134400.01
TCCATCTTCT TTCTGTTGCC TCTGTTTCTT CTTCTTCTTC TTCCTCACTT TTTCTCAGTC TTTTCTATCT TGTTCGGAAA
GAGATAGGAA AAGAATGCCG GCGGTGGGAG GAATAAGCAG CGGAGGGAGT AAGGCTTACC CTGGGAGCCT CACTCCTTTC
GTGACAGTAA CATGCATAGT TGCAGCCATG GGTGGTTTGA TCTTCGGTTA CGACATCGGA ATTTCAGGTG GGGTCACGTC
CATGGATCCG TTTCTGAAGA AGTTTTTCCC GTCGGTGTTC GATAAGAAGA ACAAGGACAA AACGTCGAAC GAGTACTGCC
AATACGACAG CGCGACACTC ACGATGTTCA CCTCGTCGCT GTACCTGGCG GCGCTGTTGT CGTCGCTGGT TGCCTCCACC
ATCACGCGGC GGTTCGGTCG GAAACTCTCC ATGCTTTTCG GTGGCCTGCT TTTCCTTGTC GGTGCTCTCA TAAACGGTTT
CGCCCAACGC GTGTGGATGC TCATCGTGGG TCGGATCTTG CTCGGGTTCG GTATCGGCTT CGCCAATCAG TCTGTGCCGC
TCTACCTGTC TGAGATGGCT CCATACAAGT ACAGAGGAGC ATTGAACATT GGCTTCCAAT TGTCAATCAC GGTTGGAATA
CTTGTGGCCA ATGTGTTGAA CTACTTCTTT GCCAAAATCA GTGGTGGTTG GGGATGGAGG TTGAGTTTGG GTGGAGCTAT
GGTCCCTGCC CTTATAATCA CAGTTGGGTC ACTAGTCCTT CCAGACACTC CCAATTCCAT GATTGAAAGG GGTGATCGTG
AGAAAGCCAG GGCCCAGCTT CAGAAAGTCC GTGGTGTGAG TGATGTTGAT GAAGAGTTCA ATGATTTAGT TGAAGCTAGT
GAATCTTCAC TCCTAGTGGA GCACCCGTGG AGGAACTTGT TGCAAAGAAA GTACAGACCC CACCTCACTA TGGCAGTGTT
GATTCCGTTT TTCCAGCAAC TTACTGGAAT CAATGTCATC ATGTTTTACG CTCCTGTCCT GTTCAGCTCC ATTGGGTTTA
AGGACGATGC TGCTCTAATG TCAGCTGTGA TCACTGGTGT TGTCAACGTT GTTGCAACTT GTGTCTCAAT TTATGGTGTT
GATAAGTGGG GTAGGAGAGC CCTTTTCCTT GAAGGTGGTG TTCAAATGCT CATTTGTCAG GCCGTGGTTG CAGCTGCAAT
TGGAGCCAAG TTTGGAGTTG ACGGGCACCC TGGTGATTTG CCAAAGTGGT ATGCAATTGT TGTGGTTCTC TTCATCTGCA
TTTACGTAGC AGCATTTGCC TGGTCATGGG GTCCCCTAGG GTGGTTGGTG CCCAGTGAGA TCTTTCCATT AGAGATTCGT
TCGGCAGCTC AAAGTATCAA CGTTTCCGTG AACATGTTCT TCACTTTTGT GATAGCTCAA GTCTTCCTGA CAATGCTTTG
CCACATGAAG TTTGGCTTGT TCATCTTCTT TGCCTTCTTT GTGTTCGTGA TGACAATCTT CATTTTCTTC TTCTTGCCTG
AAACCAAGGG CATTCCAATT GAAGAAATGG GCCAAGTTTG GAGGGCACAC CCGTTCTGGT CCAGATTCGT TGAACATGAT
GATCATGGCA ATGGTGTTGA AATGGGCAAA GGGCCTAAAG TGTAGTTCTT CTTCATGAAC TGTTTATTTT TCTGAATTGC
TACTCTATTT TTTTTTCTTT TGTTGGAAAA TCATACTATT GGTGTAGTGT CAATGTGAAT GTCCATGTTT GGAATTGTTT
CTAAATATTA AAGGGCTATT TGTCTTATAA GTTCCCAGCT TCTAAATATT AAACATTTTT TTTAATACCA ATGCAATTGC
ATAAATTGGT ATACGCTTTG AAAACATCAA CTTTGTTTCT CTCTCATGTA TCTTCATCCA ATAGGATTAT TCATCAGTGT
TGGAAACTAT GCATATGATA TGTCAGTGAC AATGGTCCAA TAGTTTAGGA ATAAATGAGA AATGGGGAAT ACCATGGATT
CATCATCATT GACCCTTGAA AGCAAT

[show][hide][copy]CDS

>Vigan.01G134400.01
ATGCCGGCGG TGGGAGGAAT AAGCAGCGGA GGGAGTAAGG CTTACCCTGG GAGCCTCACT CCTTTCGTGA CAGTAACATG
CATAGTTGCA GCCATGGGTG GTTTGATCTT CGGTTACGAC ATCGGAATTT CAGGTGGGGT CACGTCCATG GATCCGTTTC
TGAAGAAGTT TTTCCCGTCG GTGTTCGATA AGAAGAACAA GGACAAAACG TCGAACGAGT ACTGCCAATA CGACAGCGCG
ACACTCACGA TGTTCACCTC GTCGCTGTAC CTGGCGGCGC TGTTGTCGTC GCTGGTTGCC TCCACCATCA CGCGGCGGTT
CGGTCGGAAA CTCTCCATGC TTTTCGGTGG CCTGCTTTTC CTTGTCGGTG CTCTCATAAA CGGTTTCGCC CAACGCGTGT
GGATGCTCAT CGTGGGTCGG ATCTTGCTCG GGTTCGGTAT CGGCTTCGCC AATCAGTCTG TGCCGCTCTA CCTGTCTGAG
ATGGCTCCAT ACAAGTACAG AGGAGCATTG AACATTGGCT TCCAATTGTC AATCACGGTT GGAATACTTG TGGCCAATGT
GTTGAACTAC TTCTTTGCCA AAATCAGTGG TGGTTGGGGA TGGAGGTTGA GTTTGGGTGG AGCTATGGTC CCTGCCCTTA
TAATCACAGT TGGGTCACTA GTCCTTCCAG ACACTCCCAA TTCCATGATT GAAAGGGGTG ATCGTGAGAA AGCCAGGGCC
CAGCTTCAGA AAGTCCGTGG TGTGAGTGAT GTTGATGAAG AGTTCAATGA TTTAGTTGAA GCTAGTGAAT CTTCACTCCT
AGTGGAGCAC CCGTGGAGGA ACTTGTTGCA AAGAAAGTAC AGACCCCACC TCACTATGGC AGTGTTGATT CCGTTTTTCC
AGCAACTTAC TGGAATCAAT GTCATCATGT TTTACGCTCC TGTCCTGTTC AGCTCCATTG GGTTTAAGGA CGATGCTGCT
CTAATGTCAG CTGTGATCAC TGGTGTTGTC AACGTTGTTG CAACTTGTGT CTCAATTTAT GGTGTTGATA AGTGGGGTAG
GAGAGCCCTT TTCCTTGAAG GTGGTGTTCA AATGCTCATT TGTCAGGCCG TGGTTGCAGC TGCAATTGGA GCCAAGTTTG
GAGTTGACGG GCACCCTGGT GATTTGCCAA AGTGGTATGC AATTGTTGTG GTTCTCTTCA TCTGCATTTA CGTAGCAGCA
TTTGCCTGGT CATGGGGTCC CCTAGGGTGG TTGGTGCCCA GTGAGATCTT TCCATTAGAG ATTCGTTCGG CAGCTCAAAG
TATCAACGTT TCCGTGAACA TGTTCTTCAC TTTTGTGATA GCTCAAGTCT TCCTGACAAT GCTTTGCCAC ATGAAGTTTG
GCTTGTTCAT CTTCTTTGCC TTCTTTGTGT TCGTGATGAC AATCTTCATT TTCTTCTTCT TGCCTGAAAC CAAGGGCATT
CCAATTGAAG AAATGGGCCA AGTTTGGAGG GCACACCCGT TCTGGTCCAG ATTCGTTGAA CATGATGATC ATGGCAATGG
TGTTGAAATG GGCAAAGGGC CTAAAGTGTA G

[show][hide][copy]PROTEIN

>Vigan.01G134400.01
MPAVGGISSG GSKAYPGSLT PFVTVTCIVA AMGGLIFGYD IGISGGVTSM DPFLKKFFPS VFDKKNKDKT SNEYCQYDSA
TLTMFTSSLY LAALLSSLVA STITRRFGRK LSMLFGGLLF LVGALINGFA QRVWMLIVGR ILLGFGIGFA NQSVPLYLSE
MAPYKYRGAL NIGFQLSITV GILVANVLNY FFAKISGGWG WRLSLGGAMV PALIITVGSL VLPDTPNSMI ERGDREKARA
QLQKVRGVSD VDEEFNDLVE ASESSLLVEH PWRNLLQRKY RPHLTMAVLI PFFQQLTGIN VIMFYAPVLF SSIGFKDDAA
LMSAVITGVV NVVATCVSIY GVDKWGRRAL FLEGGVQMLI CQAVVAAAIG AKFGVDGHPG DLPKWYAIVV VLFICIYVAA
FAWSWGPLGW LVPSEIFPLE IRSAAQSINV SVNMFFTFVI AQVFLTMLCH MKFGLFIFFA FFVFVMTIFI FFFLPETKGI
PIEEMGQVWR AHPFWSRFVE HDDHGNGVEM GKGPKV*