GBrowse Details

Vigan.01G141200.01

Basic Information:
Name: Vigan.01G141200.01
Multiple alignment
Variant Information
Position: Chr01:14621334..14625398 (+ strand)
Length: 4065
Functional Information:
Description: Similar to Malate dehydrogenase. [I1KL87, Glycine max]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: malate metabolic process (GO:0006108)
Biological Process: cellular carbohydrate metabolic process (GO:0044262)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616)
Molecular Function: L-malate dehydrogenase activity (GO:0030060)
InterPro: Lactate/malate dehydrogenase, N-terminal (IPR001236)
L-lactate/malate dehydrogenase (IPR001557)
Malate dehydrogenase, type 1 (IPR010097)
Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (IPR015955)
NAD(P)-binding domain (IPR016040)
Lactate/malate dehydrogenase, C-terminal (IPR022383)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:112.74,29.60,55.03,269.50,25.32,32.58,27.11,38.62
Arabidopsis thaliana homolog: AT2G22780.1
Automatic updates:
Name: NM_001251558 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peroxisomal malate dehydrogenase (LOC100170735), mRNA.
PubMed ID: 18281324 NCBI(pubmed)
Status: Known Variant
Name: NM_001252960 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max malate dehydrogenase, glyoxysomal-like (LOC100799793), mRNA.
PubMed ID: 18281324 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:14621334..14621698 (+ strand)
Length: 365
Type: five_prime_UTR
Position: Chr01:14621699..14621770 (+ strand)
Length: 72
Type: CDS
Position: Chr01:14621874..14622089 (+ strand)
Length: 216
Type: CDS
Position: Chr01:14622342..14622656 (+ strand)
Length: 315
Type: CDS
Position: Chr01:14622936..14623025 (+ strand)
Length: 90
Type: CDS
Position: Chr01:14623108..14623191 (+ strand)
Length: 84
Type: CDS
Position: Chr01:14624138..14624173 (+ strand)
Length: 36
Type: CDS
Position: Chr01:14624289..14624378 (+ strand)
Length: 90
Type: CDS
Position: Chr01:14624468..14624562 (+ strand)
Length: 95
Type: CDS
Position: Chr01:14624651..14624723 (+ strand)
Length: 73
Type: CDS
Position: Chr01:14624724..14625398 (+ strand)
Length: 675
Type: three_prime_UTR


>Vigan.01G141200.01
ATCTAGCGTG TGAGTCAGGT TCTGACTTAA AAAAACAGCC ATCTTAATCA TGAACCGAAT AGTTAGCAAT CTGCTTGAAG
CTTTGTTAAA ATTGTGAGAG CCACATTCAA TTCAGACCTA AGAAGATGAT AGGATAAGAA TTCAGAAATC TGGATTCCAC
AAAAAATTCA TTTTTTCGTG AAATTTTTTT AAAAGGGGAA AAACATTGGA CGTATATGTC AACTTCCTCA TTCTCATTAT
CCCTTCATTT TATTTTCTGT TCATAAATTT ATATTCTTTT GCTCCCATCA TTTCTTTTCA AATTTTCCAC CCTCAGCTTC
AACACACTGT TTCTCCTTCT CTGATCGTAA CAGTGATACA AAAAAATGGA GGCACGTGCA GGAGCCAATC AGCGTATTGC
AAGAATCTCT GCTCATCTTC AGCCTTCAAA TTTCCAGGAA AAGGGCGATG TTATTCTCAA GAGAGCTGAG TGCAGAGCAA
AGGGTGGGGC ACCTGGATTC AAAGTGGCAA TTTTGGGGGC TGCTGGCGGA ATTGGTCAAT CCCTTTCTTT GTTGATGAAG
ATTAACCCAT TGGTTTCAGT TCTTCATCTT TATGATGTTG TCAACACCCC CGGTGTCACA GCTGATATTA GCCACATGGA
CACTGGTGCT GTGGTTCGTG GCTTTCTGGG ACAACCACAA CTCGAGAGTG CACTCACTGG CATGGACTTG GTAATCATAC
CTGCTGGGGT GCCAAGGAAA CCTGGGATGA CAAGGGATGA TTTATTTAAA ATAAATGCTG GAATTGTGAA GACCCTTAGT
GAAGGAATTG CCAAGTCCTG CCCCAATGCA ATTGTCAACT TGATCAGTAA TCCCGTGAAT TCCACTGTTG CTATTGCTGC
AGAGGTTTTC AAGAGAGCCG GTACATATGA CCCAAAGCGA CTTCTGGGTG TTACAGCTCT TGACGTTGTG AGGGCAAATA
CTTTTGTGGC AGAGGTACTT GGAGTGGATC CAAGAGAGGT TGACGTTCCA GTGGTGGGAG GTCATGCTGG GGTCACTATT
TTGCCTCTTT TGTCACAGGT TAAGCCTCCC AGTAGCTTCA CTGCAGAAGA AACTGAATAC CTGACAAATC GCATTCAAAA
TGGTGGAACT GAAGTTGTGG AGGCAAAAGC TGGTGCTGGT TCGGCCACAC TATCCATGGC ATATGCAGCT GCCAAGTTTG
CGGACGCATG CCTCCGTGGC TTAAAAGGAG AAGCTGGGGT GGTGGAGTGT GCTTTTGTTG ATTCTCAGGT TACAGAACTT
CCCTTCTTTG CAACGAAGGT ACGTCTCGGT CGTGCTGGAG CAGAAGAGGT ATATCAATTA GGCCCCCTCA ACGAGTATGA
AAGGATTGGG TTGGAAAAAG CAAAGAAAGA GTTAGCAGGA AGCATCCAGA AGGGTATAGA CTTCATCAAA AAATAAATGT
GACCAGGAAA AACTAGTTTC TGTTTCTTTT AAATAAAGAC CTTCTGTAAC GCTTCCCTTT GTTCATAGTA GATTTTTTTG
TCTTAAAAAT ATCTTTTAAA TTTTCGGTGT CATCCCTTAC TACTGATGAT CACGGATATC GTGGAACCGT ATAATGATCT
GAAAGATACT ACAATATGGG TCTTTTGTAC TAATTCAAAA TCTTATTTTA CTCGCAACAC ATTTTAGTAT TTGACAGTGC
ATAACAAATA GTAATGGCTC TTTTGTTCCT TTAGATTGTG CTGTATATGC AGAAACTGAG AAGGTTGATG ATATAATTTG
TGGTCATATC TTTTCTCTAA TCAATGGTAT GAGATCTAAC ACCAATGGTC CACTCTTCTG TCACCCATCA GAGCAAACTA
ATCTCCATAA TCAGGGATAA AAAAATGAAA TAAAGGACAG AATTTTGGAG AAGACAAAAT ACATACGTCC TCTGTCAATG
ACATGATGGC ATCAGGTTGT GCAAGAACCA TCATTAGATT GTCTTATTGC AAAGTGGGAA GTTGTAAGAT GAGATGCAGC
AGAAGATTGT TTTTTGGGGC CGTGTAGAAG CATCTATAAA TAAAGTTGAG TGATAGAAAA TATATTCAGT TTCTCGATTG
CATGTTCTTA ACTCAACTCA GCAAGCTCGG G

>Vigan.01G141200.01
ATGGAGGCAC GTGCAGGAGC CAATCAGCGT ATTGCAAGAA TCTCTGCTCA TCTTCAGCCT TCAAATTTCC AGGAAAAGGG
CGATGTTATT CTCAAGAGAG CTGAGTGCAG AGCAAAGGGT GGGGCACCTG GATTCAAAGT GGCAATTTTG GGGGCTGCTG
GCGGAATTGG TCAATCCCTT TCTTTGTTGA TGAAGATTAA CCCATTGGTT TCAGTTCTTC ATCTTTATGA TGTTGTCAAC
ACCCCCGGTG TCACAGCTGA TATTAGCCAC ATGGACACTG GTGCTGTGGT TCGTGGCTTT CTGGGACAAC CACAACTCGA
GAGTGCACTC ACTGGCATGG ACTTGGTAAT CATACCTGCT GGGGTGCCAA GGAAACCTGG GATGACAAGG GATGATTTAT
TTAAAATAAA TGCTGGAATT GTGAAGACCC TTAGTGAAGG AATTGCCAAG TCCTGCCCCA ATGCAATTGT CAACTTGATC
AGTAATCCCG TGAATTCCAC TGTTGCTATT GCTGCAGAGG TTTTCAAGAG AGCCGGTACA TATGACCCAA AGCGACTTCT
GGGTGTTACA GCTCTTGACG TTGTGAGGGC AAATACTTTT GTGGCAGAGG TACTTGGAGT GGATCCAAGA GAGGTTGACG
TTCCAGTGGT GGGAGGTCAT GCTGGGGTCA CTATTTTGCC TCTTTTGTCA CAGGTTAAGC CTCCCAGTAG CTTCACTGCA
GAAGAAACTG AATACCTGAC AAATCGCATT CAAAATGGTG GAACTGAAGT TGTGGAGGCA AAAGCTGGTG CTGGTTCGGC
CACACTATCC ATGGCATATG CAGCTGCCAA GTTTGCGGAC GCATGCCTCC GTGGCTTAAA AGGAGAAGCT GGGGTGGTGG
AGTGTGCTTT TGTTGATTCT CAGGTTACAG AACTTCCCTT CTTTGCAACG AAGGTACGTC TCGGTCGTGC TGGAGCAGAA
GAGGTATATC AATTAGGCCC CCTCAACGAG TATGAAAGGA TTGGGTTGGA AAAAGCAAAG AAAGAGTTAG CAGGAAGCAT
CCAGAAGGGT ATAGACTTCA TCAAAAAATA A

>Vigan.01G141200.01
MEARAGANQR IARISAHLQP SNFQEKGDVI LKRAECRAKG GAPGFKVAIL GAAGGIGQSL SLLMKINPLV SVLHLYDVVN
TPGVTADISH MDTGAVVRGF LGQPQLESAL TGMDLVIIPA GVPRKPGMTR DDLFKINAGI VKTLSEGIAK SCPNAIVNLI
SNPVNSTVAI AAEVFKRAGT YDPKRLLGVT ALDVVRANTF VAEVLGVDPR EVDVPVVGGH AGVTILPLLS QVKPPSSFTA
EETEYLTNRI QNGGTEVVEA KAGAGSATLS MAYAAAKFAD ACLRGLKGEA GVVECAFVDS QVTELPFFAT KVRLGRAGAE
EVYQLGPLNE YERIGLEKAK KELAGSIQKG IDFIKK*