GBrowse Details

Vigan.01G141500.01

Basic Information:
Name: Vigan.01G141500.01
Multiple alignment
Variant Information
Position: Chr01:14640668..14643388 (+ strand)
Length: 2721
Functional Information:
Description: Similar to Voltage-gated potassium channel subunit beta-2. [G7JTZ5, Medicago truncatula]
InterPro: Aldo/keto reductase (IPR001395)
NADP-dependent oxidoreductase domain (IPR023210)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.32,0.35,15.67,13.51,36.31,37.21,16.95,14.26
Arabidopsis thaliana homolog: AT4G33670.1
Automatic updates:
Name: NM_001254312 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max L-galactose dehydrogenase (LOC100809400), mRNA.
PubMed ID: 28663755 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:14640668..14640780 (+ strand)
Length: 113
Type: five_prime_UTR
Position: Chr01:14640781..14640941 (+ strand)
Length: 161
Type: CDS
Position: Chr01:14641019..14641247 (+ strand)
Length: 229
Type: CDS
Position: Chr01:14641348..14641647 (+ strand)
Length: 300
Type: CDS
Position: Chr01:14642282..14642410 (+ strand)
Length: 129
Type: CDS
Position: Chr01:14642943..14643074 (+ strand)
Length: 132
Type: CDS
Position: Chr01:14643075..14643388 (+ strand)
Length: 314
Type: three_prime_UTR


>Vigan.01G141500.01
GGGTGGGTCC ACTTTGCAAG TTTCTTTCAA ATTCATAAAT GGTAATCATC CATTGCTGTG TGATTGAAGA AAGAAAGAAG
AGTGTGTGTT TGAGAGAGTG AGAGAGTGAG AGAATGGAGT TACGTGAGCT TGGTAGAACC GGACTGAAAG TGAGCAGCAT
CGGTTTCGGA GCTTCTCCAC TGGGCAATGT CTTCGGCACA GTTTCCGAGG AGCAGGCCAA CGCTTCCGTT CGCCTGGCCT
TTCAATCCGG CATCAATTTC TTCGACACTT CTCCGTATTA CGGAGGGACA TTGTCGGAGA AAGTGCTGGG GAAGGCACTC
AAGGCTCTTG AAGCTCCTCG GAGCTCCTAC GTTGTGGCGA CGAAGTGCGG ACGGTACGTG GACGGTTTTG ATTTCAGCGC
GGAGAGAGTC ACGAGGAGCG TGGAAGAGAG CTTGGAGAGG TTGCAGCTTG ACTACGTTGA CATTCTCCAG TGCCACGACA
TCGAGTTCGG TTCCCTAGAC CAGATCGTGA ACGAGACGAT TCCGGCGCTG GTGAAATTGA AGGAGGCGGG GAAGACGCGT
TTGATCGGCA TAACGGGGCT TCCTCTGGGG ATTTTCAGTT ACGTGCTTGA TAGGGTTCCG CCTGGGACGC TTGATGTGGT
GCTTTCGTAT TGCCATTACT CTGTGAATGA CTCCAGCTTG GGGGATTTGA TACCCTATTT GAAGGCCAAA GGGGTTGGCA
TCATCAATGC TTCTCCTCTC TCCATGGGCC TTCTCACTCA TGCTGGCCCA CCTCCATGGC ATCCGGCTTC GCCCCAACTC
AAGTCTGCAT GCGAAGCTGC TGCCGCTCAT TGTAAAGAAA AGGGAAAAAA CATTTCAAAG TTAGCGTTGC AGTACAGCTT
GTTGAATAAG GAAATCTCAT CAGTGCTTGT AGGCATGAAA TCCGTTGAAC AGGTGGAGGA AAATGTTGCT GCTGCACGAG
AACTAGCAAA TAGTGGCATT GATGAAGAGG CTCTATCAGA AGTTGAAGCT ATTCTGAAGC CTGCTAAAAA TCAGTCATGG
CCCAGTGGAA TCCAGCAGAG CTGATGTTTA TTCTACTGCC TGGTATTGCT TATGGAGATA TCCACTCCTG CTGTTTACTT
TACTGCTATA ATCCTATTCA ATAATAGAAA TTGCTTTGAC AGCTAATAAG ATCCACTGTC TAGATAACTT TTGTTTTATA
GTCTAGAGTG CGTCCAATAA TACATTTCTC ACTACGTCGT TATTTAATGC CCTTCATCCT TGGTTGGAAA GTTAGAGTCG
CTGATTGAAC TGGTTTGCAA AACTACAGTG AAAAGAAAGG CAGTATTTTG TTCTCTTGTA TATTTTTTTA ATTTATAGAT
AGTGTTTACA ATGCAGAA

>Vigan.01G141500.01
ATGGAGTTAC GTGAGCTTGG TAGAACCGGA CTGAAAGTGA GCAGCATCGG TTTCGGAGCT TCTCCACTGG GCAATGTCTT
CGGCACAGTT TCCGAGGAGC AGGCCAACGC TTCCGTTCGC CTGGCCTTTC AATCCGGCAT CAATTTCTTC GACACTTCTC
CGTATTACGG AGGGACATTG TCGGAGAAAG TGCTGGGGAA GGCACTCAAG GCTCTTGAAG CTCCTCGGAG CTCCTACGTT
GTGGCGACGA AGTGCGGACG GTACGTGGAC GGTTTTGATT TCAGCGCGGA GAGAGTCACG AGGAGCGTGG AAGAGAGCTT
GGAGAGGTTG CAGCTTGACT ACGTTGACAT TCTCCAGTGC CACGACATCG AGTTCGGTTC CCTAGACCAG ATCGTGAACG
AGACGATTCC GGCGCTGGTG AAATTGAAGG AGGCGGGGAA GACGCGTTTG ATCGGCATAA CGGGGCTTCC TCTGGGGATT
TTCAGTTACG TGCTTGATAG GGTTCCGCCT GGGACGCTTG ATGTGGTGCT TTCGTATTGC CATTACTCTG TGAATGACTC
CAGCTTGGGG GATTTGATAC CCTATTTGAA GGCCAAAGGG GTTGGCATCA TCAATGCTTC TCCTCTCTCC ATGGGCCTTC
TCACTCATGC TGGCCCACCT CCATGGCATC CGGCTTCGCC CCAACTCAAG TCTGCATGCG AAGCTGCTGC CGCTCATTGT
AAAGAAAAGG GAAAAAACAT TTCAAAGTTA GCGTTGCAGT ACAGCTTGTT GAATAAGGAA ATCTCATCAG TGCTTGTAGG
CATGAAATCC GTTGAACAGG TGGAGGAAAA TGTTGCTGCT GCACGAGAAC TAGCAAATAG TGGCATTGAT GAAGAGGCTC
TATCAGAAGT TGAAGCTATT CTGAAGCCTG CTAAAAATCA GTCATGGCCC AGTGGAATCC AGCAGAGCTG A

>Vigan.01G141500.01
MELRELGRTG LKVSSIGFGA SPLGNVFGTV SEEQANASVR LAFQSGINFF DTSPYYGGTL SEKVLGKALK ALEAPRSSYV
VATKCGRYVD GFDFSAERVT RSVEESLERL QLDYVDILQC HDIEFGSLDQ IVNETIPALV KLKEAGKTRL IGITGLPLGI
FSYVLDRVPP GTLDVVLSYC HYSVNDSSLG DLIPYLKAKG VGIINASPLS MGLLTHAGPP PWHPASPQLK SACEAAAAHC
KEKGKNISKL ALQYSLLNKE ISSVLVGMKS VEQVEENVAA ARELANSGID EEALSEVEAI LKPAKNQSWP SGIQQS*