GBrowse Details

Vigan.01G145200.01

Basic Information:
Name: Vigan.01G145200.01
Multiple alignment
Variant Information
Position: Chr01:15425212..15433251 (+ strand)
Length: 8040
Functional Information:
Description: Similar to Uncharacterized protein. [I1KQX0, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: methylmalonate-semialdehyde dehydrogenase (acylating) activity (GO:0004491)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620)
InterPro: Methylmalonate-semialdehyde dehydrogenase (IPR010061)
Aldehyde dehydrogenase domain (IPR015590)
Aldehyde dehydrogenase, conserved site (IPR016160)
Aldehyde/histidinol dehydrogenase (IPR016161)
Aldehyde dehydrogenase, N-terminal (IPR016162)
Aldehyde dehydrogenase, C-terminal (IPR016163)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:28.74,15.12,40.45,40.25,75.56,89.50,42.93,20.40
Arabidopsis thaliana homolog: AT2G14170.1
Automatic updates:
Name: NM_001368739 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial (ALDH6B1), mRNA; nuclear gene for mitochondrial product.
PubMed ID: 28687067 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:15425212..15425420 (+ strand)
Length: 209
Type: five_prime_UTR
Position: Chr01:15425421..15425445 (+ strand)
Length: 25
Type: CDS
Position: Chr01:15425567..15425664 (+ strand)
Length: 98
Type: CDS
Position: Chr01:15426200..15426271 (+ strand)
Length: 72
Type: CDS
Position: Chr01:15426377..15426538 (+ strand)
Length: 162
Type: CDS
Position: Chr01:15426629..15426707 (+ strand)
Length: 79
Type: CDS
Position: Chr01:15426811..15426965 (+ strand)
Length: 155
Type: CDS
Position: Chr01:15427179..15427242 (+ strand)
Length: 64
Type: CDS
Position: Chr01:15429961..15430040 (+ strand)
Length: 80
Type: CDS
Position: Chr01:15430334..15430399 (+ strand)
Length: 66
Type: CDS
Position: Chr01:15430644..15430694 (+ strand)
Length: 51
Type: CDS
Position: Chr01:15430789..15430940 (+ strand)
Length: 152
Type: CDS
Position: Chr01:15431395..15431485 (+ strand)
Length: 91
Type: CDS
Position: Chr01:15431640..15431720 (+ strand)
Length: 81
Type: CDS
Position: Chr01:15431818..15431895 (+ strand)
Length: 78
Type: CDS
Position: Chr01:15431994..15432029 (+ strand)
Length: 36
Type: CDS
Position: Chr01:15432296..15432418 (+ strand)
Length: 123
Type: CDS
Position: Chr01:15432705..15432795 (+ strand)
Length: 91
Type: CDS
Position: Chr01:15432906..15433015 (+ strand)
Length: 110
Type: CDS
Position: Chr01:15433016..15433251 (+ strand)
Length: 236
Type: three_prime_UTR


>Vigan.01G145200.01
AGAAAACTGA ATCTGATTTG GCATCTCTAT CGGTTGAATT GTCCTTTAGT TCTTCCTCTA TTTTATATTT CACAGGCTCC
ATCACTGACA GGTCAGTGTT TGCACTTGGA TTCAAGCCTG AGGCGTCGTT GTGAAAAATA AGGTTTGTGG TCTCCTAAGT
TATCAATCAT AATCTCTTCA AACACGCTTC ATAGCACATC GAAGCGAGGA TGTTGCGGCT TTCGATTCTA CGAGCGAGAA
AGTTGGACTT TATGAGGCCT CAGATCTCTG CACCGGGAAG GTCCCATTTC TCAACTGCTG TCGAACCATC TTCCAGTAAG
AGCAATCCAC CGAGGGTTCC TAATCTTATT GGGGGCAGAT TTATTGACTC AAAATCATCA ACTGTCATTG ATGTTATAAA
CCCAGCAACC CAAGAAGTTG TTTCACAAGT CCCTTTGTCT ACGGATGAAG AGTTTAAGGC GGCTGTATCT GCAGCAAAGA
AGGCATATCC ATTATGGCGT AACACTCCAA TTACAACACG CCAACGTGTT ATGTTGAAGT TTCAGGAGCT GATCCGCAGA
GATATGGACA AACTTGCTCT GAATGTGACC ACTGAACAAG GAAAGACGTT GAAGGATGCA CAAGGAGATG TATTTCGTGG
TTTAGAGGTG GTGGAACATG CTTGTGGGAT GGCAACTCTA CAAATGGGGG AATATGTTTC AAATGTATCA CATGGAATTG
ATACTTACAG TATTAGAGAA CCACTTGGTG TTTGCGCTGG TATTTGTCCT TTCAACTTTC CTGCAATGAT TCCCTTGTGG
ATGTTCCCTG TGGCTGTTAC TTGTGGTAAC ACCTTTGTTC TAAAACCATC AGAGAAAGAC CCAGGTGCTT CTGTCATGCT
TGCAGAATTA GCATTGGAGG CTGGTTTGCC AGAGGGTGTC TTAAATATAG TTCATGGAAC CCATGATATT GTGAATTCTA
TTTGCGACGA TGATGACATC AAAGCCATAT CATTTGTTGG TTCAAATGTT GCTGGAATGC ACATATATTC AAGAGCAGCA
GCTAAAGGGA AACGTGTTCA GTCTAACATG GGAGCAAAAA ATCATGCCAT TGTCTTGCCA GATGCAAATG TTGATGCTAC
TCTAAATGCT TTAGTTGCAG CTGGTTTTGG TGCTGCTGGT CAAAGGTGTA TGGCTCTCAG CACAGTTGTT TTTGTTGGAG
ACGCAAAATC ATGGAAAGCT AAACTTGTAG AGCGTGCCAA AGCTCTCAAG GTAAATGCGG GAACTGAACC TGATACAGAC
CTTGGTCCAG TGATCAGCAA GCAGGCAAAG GAGAGAATAC ACAGACTAGT TAAATCTGGT GTTGAAAGTG GTGCCAAATT
ACTGCTGGAT GGAAGAAATA TTGTGGTTCC AGGATATGAA TCTGGCAATT TTATTGGCCC AACCATCTTA TCAGATATCA
CTACCAACAT GGAGTGCTAC AAGGAGGAAA TTTTTGGCCC AGTTCTTCTT TTCATGGAGG CTGATAGCTT AGAAGAGGCC
ATAAGCATTG TTAATAGTAA CAAGTACGGA AATGGTGCTT CAATATTCAC CACATCTGGT GTTGCTGCAA GGAAATTTCA
GACTGAGATA GAGGCAGGCC AGGTTGGCAT CAATGTTCCC ATTCCAGTTC CATTGCCCTT CTTCTCATTC ACTGGCAACA
AGGCATCTTT TGCCGGTGAT CTCAACTTCT ATGGCAAGGC AGGGGTTAAC TTTTATACTC AGATCAAGAC AATAACACAG
CAATGGAAGG ATTCAACTGA TGGCAGCAAG ATTAACATGG CAATGCCAAC CTCTCAAAAA TAATTTTGAT TAGCCAGAGT
GTGAAATATA ATGTTTCTGA AACATTTGCT CCCTTCAATA AAGGAACTTA ATTGAATAAT AAATAGAAGA AATAACATTC
CATAATTTAA AAATTGAAAA AGTTATTCCG GTTCAACGAT CTTTTTAACC AAAACTGTAA AATGTGTATA AATTATAGGT
TCTAAAAGAG GGATGGAAGC CTACAAATAT TGTATACATA AGGATTTAAT TCAATAGAC

>Vigan.01G145200.01
ATGTTGCGGC TTTCGATTCT ACGAGCGAGA AAGTTGGACT TTATGAGGCC TCAGATCTCT GCACCGGGAA GGTCCCATTT
CTCAACTGCT GTCGAACCAT CTTCCAGTAA GAGCAATCCA CCGAGGGTTC CTAATCTTAT TGGGGGCAGA TTTATTGACT
CAAAATCATC AACTGTCATT GATGTTATAA ACCCAGCAAC CCAAGAAGTT GTTTCACAAG TCCCTTTGTC TACGGATGAA
GAGTTTAAGG CGGCTGTATC TGCAGCAAAG AAGGCATATC CATTATGGCG TAACACTCCA ATTACAACAC GCCAACGTGT
TATGTTGAAG TTTCAGGAGC TGATCCGCAG AGATATGGAC AAACTTGCTC TGAATGTGAC CACTGAACAA GGAAAGACGT
TGAAGGATGC ACAAGGAGAT GTATTTCGTG GTTTAGAGGT GGTGGAACAT GCTTGTGGGA TGGCAACTCT ACAAATGGGG
GAATATGTTT CAAATGTATC ACATGGAATT GATACTTACA GTATTAGAGA ACCACTTGGT GTTTGCGCTG GTATTTGTCC
TTTCAACTTT CCTGCAATGA TTCCCTTGTG GATGTTCCCT GTGGCTGTTA CTTGTGGTAA CACCTTTGTT CTAAAACCAT
CAGAGAAAGA CCCAGGTGCT TCTGTCATGC TTGCAGAATT AGCATTGGAG GCTGGTTTGC CAGAGGGTGT CTTAAATATA
GTTCATGGAA CCCATGATAT TGTGAATTCT ATTTGCGACG ATGATGACAT CAAAGCCATA TCATTTGTTG GTTCAAATGT
TGCTGGAATG CACATATATT CAAGAGCAGC AGCTAAAGGG AAACGTGTTC AGTCTAACAT GGGAGCAAAA AATCATGCCA
TTGTCTTGCC AGATGCAAAT GTTGATGCTA CTCTAAATGC TTTAGTTGCA GCTGGTTTTG GTGCTGCTGG TCAAAGGTGT
ATGGCTCTCA GCACAGTTGT TTTTGTTGGA GACGCAAAAT CATGGAAAGC TAAACTTGTA GAGCGTGCCA AAGCTCTCAA
GGTAAATGCG GGAACTGAAC CTGATACAGA CCTTGGTCCA GTGATCAGCA AGCAGGCAAA GGAGAGAATA CACAGACTAG
TTAAATCTGG TGTTGAAAGT GGTGCCAAAT TACTGCTGGA TGGAAGAAAT ATTGTGGTTC CAGGATATGA ATCTGGCAAT
TTTATTGGCC CAACCATCTT ATCAGATATC ACTACCAACA TGGAGTGCTA CAAGGAGGAA ATTTTTGGCC CAGTTCTTCT
TTTCATGGAG GCTGATAGCT TAGAAGAGGC CATAAGCATT GTTAATAGTA ACAAGTACGG AAATGGTGCT TCAATATTCA
CCACATCTGG TGTTGCTGCA AGGAAATTTC AGACTGAGAT AGAGGCAGGC CAGGTTGGCA TCAATGTTCC CATTCCAGTT
CCATTGCCCT TCTTCTCATT CACTGGCAAC AAGGCATCTT TTGCCGGTGA TCTCAACTTC TATGGCAAGG CAGGGGTTAA
CTTTTATACT CAGATCAAGA CAATAACACA GCAATGGAAG GATTCAACTG ATGGCAGCAA GATTAACATG GCAATGCCAA
CCTCTCAAAA ATAA

>Vigan.01G145200.01
MLRLSILRAR KLDFMRPQIS APGRSHFSTA VEPSSSKSNP PRVPNLIGGR FIDSKSSTVI DVINPATQEV VSQVPLSTDE
EFKAAVSAAK KAYPLWRNTP ITTRQRVMLK FQELIRRDMD KLALNVTTEQ GKTLKDAQGD VFRGLEVVEH ACGMATLQMG
EYVSNVSHGI DTYSIREPLG VCAGICPFNF PAMIPLWMFP VAVTCGNTFV LKPSEKDPGA SVMLAELALE AGLPEGVLNI
VHGTHDIVNS ICDDDDIKAI SFVGSNVAGM HIYSRAAAKG KRVQSNMGAK NHAIVLPDAN VDATLNALVA AGFGAAGQRC
MALSTVVFVG DAKSWKAKLV ERAKALKVNA GTEPDTDLGP VISKQAKERI HRLVKSGVES GAKLLLDGRN IVVPGYESGN
FIGPTILSDI TTNMECYKEE IFGPVLLFME ADSLEEAISI VNSNKYGNGA SIFTTSGVAA RKFQTEIEAG QVGINVPIPV
PLPFFSFTGN KASFAGDLNF YGKAGVNFYT QIKTITQQWK DSTDGSKINM AMPTSQK*