GBrowse Details

Vigan.01G147100.01

Basic Information:
Name: Vigan.01G147100.01
Multiple alignment
Variant Information
Position: Chr01:15701574..15703510 (+ strand)
Length: 1937
Functional Information:
Description: Similar to Uncharacterized protein. [I3SPQ5, Lotus japonicus]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: catalytic activity (GO:0003824)
InterPro: Isochorismatase-like (IPR000868)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:452.89,7.43,5.35,49.20,113.96,3.92,73.12,2.93
Arabidopsis thaliana homolog: AT2G22570.1
Automatic updates:
Name: NM_001255553 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cysteine hydrolases superfamily protein (LOC100814228), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:15701574..15701759 (+ strand)
Length: 186
Type: five_prime_UTR
Position: Chr01:15701760..15701900 (+ strand)
Length: 141
Type: CDS
Position: Chr01:15702038..15702221 (+ strand)
Length: 184
Type: CDS
Position: Chr01:15702670..15702803 (+ strand)
Length: 134
Type: CDS
Position: Chr01:15702907..15703092 (+ strand)
Length: 186
Type: CDS
Position: Chr01:15703214..15703306 (+ strand)
Length: 93
Type: CDS
Position: Chr01:15703307..15703510 (+ strand)
Length: 204
Type: three_prime_UTR


>Vigan.01G147100.01
CGTCATTATC CTTTCTTTGA CATTTCCACT TGACTGAGTC ACGGATAACA CTATGCAGAT CATGTTCACC ACCTTGTATA
CTTATTCTGC GTTATAAAAT AAAGATTTCA CTAAAAATCT GTCCGTGACA TTGAATACAC ACAATTTTTA GGCATCTCTG
AAATTATCAG GTAAGTGAAA ACCAAAATGG TGTCACAGAC AGTTGAACTC CTAAAGAAGG AGATTCCTCT GGAGCAGGAA
TCGGTAGTTT TAGCTGAAGA TACAGTAAAT GGTCTTGTTC TTGTGGACAT CATAAATGGC TTCTGCACAG TTGGTGCTGG
AAATCTGGCT CCAAGAGAAC CCAATAGACA GATTCGGGGA ATGATCAATG AATCAGCAAG GCTAGCTAGA GTATTCTGTG
AGAAGAAATT GCCAGTTATG GCTTTCTTGG ATTCTCACCA TCCTAACAAG CCAGAGGATC CTTATCCCAC TCACTGTATT
ATTGGCTCTG ATGAATCAAA TCTGGTTCCT GAGTTAAGAT GGCTGGAGAA TGAAGCAAAT GTAACAATAA GGCGAAAGGA
TTGTTTTGAC GGATATGTGG GCTCAATAGA AGAAGATGGT ACTAACGTTT TTGTAGATTG GGTGAAAAAG AATAAGATAA
CAACACTGGT GGTTGTAGGT GTGTGCACAG ATATCTGTGT TCTAGATTTT GTATGTTCCA CAATGTCAGC AAAAAATCGT
GGTTTTCTGA ATCCTTTAGA AAACGTGGTG GTGTATTCAC GTGGCTGTGC TACCTTTGAT ATCCCTCTGG AAGTAGCCAC
AGATACCAAA GGAGCTTGGG CACATCCACA GGAGTTTATG CATCACGTAG GGCTCTATAT GGCCAAAGAA AGGGGAGCCA
AAATAGCAAG GGAAGTGTTA ATTGGTGCAC CTGAGAAGGT TTAATATATA AACGTGATTT GTAATATTTT TCAGGTTATG
TTTGGAGTTT GGAACGTACT ACTTATGAAT AAGTTCTCTG TAAAAGGTAT CTAATGATAC ATATACATAT GGTAGGTCCG
ATAAGTTATA AGGGATTATG TACATAAGGT TTATTGCTAA ATAAAAATTT TCGCTCGTGT TTGTGCCGGA GATTTCAACC
ACTCCAAA

>Vigan.01G147100.01
ATGGTGTCAC AGACAGTTGA ACTCCTAAAG AAGGAGATTC CTCTGGAGCA GGAATCGGTA GTTTTAGCTG AAGATACAGT
AAATGGTCTT GTTCTTGTGG ACATCATAAA TGGCTTCTGC ACAGTTGGTG CTGGAAATCT GGCTCCAAGA GAACCCAATA
GACAGATTCG GGGAATGATC AATGAATCAG CAAGGCTAGC TAGAGTATTC TGTGAGAAGA AATTGCCAGT TATGGCTTTC
TTGGATTCTC ACCATCCTAA CAAGCCAGAG GATCCTTATC CCACTCACTG TATTATTGGC TCTGATGAAT CAAATCTGGT
TCCTGAGTTA AGATGGCTGG AGAATGAAGC AAATGTAACA ATAAGGCGAA AGGATTGTTT TGACGGATAT GTGGGCTCAA
TAGAAGAAGA TGGTACTAAC GTTTTTGTAG ATTGGGTGAA AAAGAATAAG ATAACAACAC TGGTGGTTGT AGGTGTGTGC
ACAGATATCT GTGTTCTAGA TTTTGTATGT TCCACAATGT CAGCAAAAAA TCGTGGTTTT CTGAATCCTT TAGAAAACGT
GGTGGTGTAT TCACGTGGCT GTGCTACCTT TGATATCCCT CTGGAAGTAG CCACAGATAC CAAAGGAGCT TGGGCACATC
CACAGGAGTT TATGCATCAC GTAGGGCTCT ATATGGCCAA AGAAAGGGGA GCCAAAATAG CAAGGGAAGT GTTAATTGGT
GCACCTGAGA AGGTTTAA

>Vigan.01G147100.01
MVSQTVELLK KEIPLEQESV VLAEDTVNGL VLVDIINGFC TVGAGNLAPR EPNRQIRGMI NESARLARVF CEKKLPVMAF
LDSHHPNKPE DPYPTHCIIG SDESNLVPEL RWLENEANVT IRRKDCFDGY VGSIEEDGTN VFVDWVKKNK ITTLVVVGVC
TDICVLDFVC STMSAKNRGF LNPLENVVVY SRGCATFDIP LEVATDTKGA WAHPQEFMHH VGLYMAKERG AKIAREVLIG
APEKV*