GBrowse Details

Vigan.01G147600.01

Basic Information:
Name: Vigan.01G147600.01
Multiple alignment
Variant Information
Position: Chr01:15793612..15798223 (+ strand)
Length: 4612
Functional Information:
Description: Similar to Vacuole. [XP_007042836.1, Theobroma cacao]
InterPro: Golgi apparatus membrane protein TVP15 (IPR013714)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:23.37,13.82,5.14,3.07,3.52,6.72,2.81,4.23
Arabidopsis thaliana homolog: AT4G33625.1
Structure :
Position: Chr01:15793612..15794026 (+ strand)
Length: 415
Type: five_prime_UTR
Position: Chr01:15794027..15794317 (+ strand)
Length: 291
Type: CDS
Position: Chr01:15794394..15794489 (+ strand)
Length: 96
Type: CDS
Position: Chr01:15794599..15794639 (+ strand)
Length: 41
Type: CDS
Position: Chr01:15795509..15795626 (+ strand)
Length: 118
Type: CDS
Position: Chr01:15797039..15797119 (+ strand)
Length: 81
Type: CDS
Position: Chr01:15797892..15797948 (+ strand)
Length: 57
Type: CDS
Position: Chr01:15797949..15798223 (+ strand)
Length: 275
Type: three_prime_UTR


>Vigan.01G147600.01
ATCTAACAAG AACCATATAT TATTATTGTT TTAAAGTATA GTTACAAGAC TCTCGCAATC CATTTTTGAC ACACTAGATG
CAAGACAAAA GCCGTTAGAC GTAGTATACG GAAAATGATA CTTGAACAAC CATTTTTGAC AACATTTAGA CACGCGCACA
CGTGTCTAAA TTTGAGTGGT CCAGTTGGAA AAATTAAATG AAAATGGACC ACTCAAATTT AGACACGTGT GCGCGTGTCT
AAATGTTGTC AAAAATGGTT GTTCAAGTGT CATTTTCCGT AGTATAAAGG TAGAACATAC TTTTGTTTTT CCCAAACTTT
TAATTTGTTA ACAAGTGTAC ATAGTGATTG TTTTTTCATT AGGAGACGTA ATTAAGTGTT AATCCCAATG TTTGAATCGC
CACGTGTTCC TCTTGATGTG GAAGAAGCAG AGAAAAGCAA AAGCAAAAGC AAATCAAAAA CAGATTCCAT ACCCGTTTTC
AACTCCACCC TTCTGTCTGT TGCCTCCGAT AACGAACTCC CACTGTTCCA CAAAAATGTC CCGAAACGGC GACGTAGAGG
AAGAGAGCGT CGTCACTAGA ACAAACAGAC CAGACCCTTT CTTGGTAGCA TGCCGCTGCT TCAGCTTCCT CACCTCGCTC
GCCGCCATTC TCTGCATCGC CGTCAATGTT CTCTCCGCCG TCCGTTCCTT CAAACACGCA TCCGACATTT TCGACGGCAT
ATTCCGCTGT TACGCTGTTA TCATAGCGGC TTTTGTGGTC CTCGCTGAGA CCGAATGGAG TTTCATCCTC AAGTTCTCTA
AGGTTTTGGA GTATTGGGCT GCCAGGGGTA TGCTGCAGAT CTTTGTTGCT GTCATGACAA GGGCTTTTCC TGACATTACT
GGGGAGCGAA GGAACCTTTT TCTTCTTCAG AGCATAGCAA GTTATTTGCT ACTTGGCTGT GGCGTTATTT ATGTTGTTTC
AGGTATCATG TGCATTGGTT TTCTTAAACG TGCCCGCCAG AAACAGGAGA TTACAAGAGA GCAAGCAACC AAGGATCTCG
AGGAATTGGA ACGGCGCAGG GAAGAACTTG AACAACTACT CCTTTCCGAA AGAGTTTAAA GCATTTTAAA GTTGTGGTGA
GCTGATATAA ATCGGTAGTG ATGATTAATC TACGGCAAAC CAATGAACCT CTGTTTATCA GTATTGTTTA CAAAATTGTT
TGTTCATTCT TTGTAACCGA GTTATATTCT TAGATATAGG CTTATTAAAG GTGGGCTGTT GGCATATTCT TTGTAAATAT
ATAAAGCAGT ATTTAAAATT GTCTCAGTTT TTATAGAGAC TTGAATCCAA TTATAACTGA CGATATATAA TAAACTCTCC
ACTTTGTTAG AGCA

>Vigan.01G147600.01
ATGTGGAAGA AGCAGAGAAA AGCAAAAGCA AAAGCAAATC AAAAACAGAT TCCATACCCG TTTTCAACTC CACCCTTCTG
TCTGTTGCCT CCGATAACGA ACTCCCACTG TTCCACAAAA ATGTCCCGAA ACGGCGACGT AGAGGAAGAG AGCGTCGTCA
CTAGAACAAA CAGACCAGAC CCTTTCTTGG TAGCATGCCG CTGCTTCAGC TTCCTCACCT CGCTCGCCGC CATTCTCTGC
ATCGCCGTCA ATGTTCTCTC CGCCGTCCGT TCCTTCAAAC ACGCATCCGA CATTTTCGAC GGCATATTCC GCTGTTACGC
TGTTATCATA GCGGCTTTTG TGGTCCTCGC TGAGACCGAA TGGAGTTTCA TCCTCAAGTT CTCTAAGGTT TTGGAGTATT
GGGCTGCCAG GGGTATGCTG CAGATCTTTG TTGCTGTCAT GACAAGGGCT TTTCCTGACA TTACTGGGGA GCGAAGGAAC
CTTTTTCTTC TTCAGAGCAT AGCAAGTTAT TTGCTACTTG GCTGTGGCGT TATTTATGTT GTTTCAGGTA TCATGTGCAT
TGGTTTTCTT AAACGTGCCC GCCAGAAACA GGAGATTACA AGAGAGCAAG CAACCAAGGA TCTCGAGGAA TTGGAACGGC
GCAGGGAAGA ACTTGAACAA CTACTCCTTT CCGAAAGAGT TTAA

>Vigan.01G147600.01
MWKKQRKAKA KANQKQIPYP FSTPPFCLLP PITNSHCSTK MSRNGDVEEE SVVTRTNRPD PFLVACRCFS FLTSLAAILC
IAVNVLSAVR SFKHASDIFD GIFRCYAVII AAFVVLAETE WSFILKFSKV LEYWAARGML QIFVAVMTRA FPDITGERRN
LFLLQSIASY LLLGCGVIYV VSGIMCIGFL KRARQKQEIT REQATKDLEE LERRREELEQ LLLSERV*