GBrowse Details

Vigan.01G155900.01

Basic Information:
Name: Vigan.01G155900.01
Multiple alignment
Variant Information
Position: Chr01:16986808..16996487 (+ strand)
Length: 9680
Functional Information:
Description: Similar to Uncharacterized protein. [K7KPQ8, Glycine max]
InterPro: Endoplasmic reticulum vesicle transporter, C-terminal (IPR012936)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:36.66,16.43,21.31,21.56,26.36,20.05,39.82,21.41
Arabidopsis thaliana homolog: AT1G22200.1, AT1G36050.1
Automatic updates:
Name: NM_001255116 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max endoplasmic reticulum-Golgi intermediate compartment protein 3-like (LOC100781612), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:16986808..16987048 (+ strand)
Length: 241
Type: five_prime_UTR
Position: Chr01:16987049..16987190 (+ strand)
Length: 142
Type: CDS
Position: Chr01:16987931..16988004 (+ strand)
Length: 74
Type: CDS
Position: Chr01:16988259..16988342 (+ strand)
Length: 84
Type: CDS
Position: Chr01:16988498..16988578 (+ strand)
Length: 81
Type: CDS
Position: Chr01:16990408..16990488 (+ strand)
Length: 81
Type: CDS
Position: Chr01:16991354..16991446 (+ strand)
Length: 93
Type: CDS
Position: Chr01:16991792..16991971 (+ strand)
Length: 180
Type: CDS
Position: Chr01:16992099..16992166 (+ strand)
Length: 68
Type: CDS
Position: Chr01:16993231..16993282 (+ strand)
Length: 52
Type: CDS
Position: Chr01:16993574..16993627 (+ strand)
Length: 54
Type: CDS
Position: Chr01:16993710..16993796 (+ strand)
Length: 87
Type: CDS
Position: Chr01:16995427..16995493 (+ strand)
Length: 67
Type: CDS
Position: Chr01:16995847..16995938 (+ strand)
Length: 92
Type: CDS
Position: Chr01:16995939..16996487 (+ strand)
Length: 549
Type: three_prime_UTR


>Vigan.01G155900.01
TTTTACCAAT CATTCAAATT TTATTTGTGA AAAATAAAAG GGGTTTTAGA CGGCATGTTT GACTAAATTG ACCTTGAATA
AGGGGTCATA TGATCCCGTG TTTGTTTCGT TCTTTCTTCA TTCTACAACA ACCCATTCCT TCCCCCACGC GCCATTCTCC
GGCCACCGTT GGTGACGGAG CGCCGTTCAT AGTATAATAT TCTCTGAAAG GTGGGTGCTT GTGAGGTTTC GGCGACCATC
CATGGATAAA GTCTTCAACA GGCTCCGCAA TTTGGACGCT TACCCAAAAG TCAATGAAGA TTTTTACAGC CGCACGCTCG
CCGGCGGCGT CGTCACCGTC GTTTCCGCGG CTGTCATGCT CTTCCTCTTC TTTTCCGAGC TAAATTTATA TCTCTATACA
GTTACAGAGA GTACGCTTTT GGTGGATACT TCAAGAGGAG ATACCTTGCA CATCAATTTT GATGTCACTT TTCCTGCTGT
TCGATGTTCA ATACTCAGTT TAGATGCAAT GGATATTAGT GGGGAGCAGC ACCTTGACAT ACGACATAAT ATAGTGAAGA
AAAGAATTGA TGCTAATGGT AATGTGGTAG AAGAGAGGAA GGATGGAATT GGTGCACCAA AGATTGAGAG ACCCTTACAA
AAACATGGTG GCAGACTTGG ACATGATGAG AAGTATTGTG GTTCATGTTT TGGTGCGGAA GAGTCAGATG AACACTGTTG
TAATTCTTGT GAAGAAGTTC GTGAAGCATA TAGGAAAAAG GGGTGGGCTC TGACAAATAT GGATTTGATT GATCAGTGTC
AAAGAGAAGG TTACGTGCAA AGGGTAAAGG ATGAAGAAGG TGAAGGATGC AATATTCAAG GATCTCTTGA AGTTAATAAA
GTGGCAGGAA ATTTTCATTT TGCAACCGGG AAAAGCTTTC TTCAGTCTGC TATATTTCTT GCTGATCTTC TTGCTTTACA
GGATAATCAT TATAATATAA GCCATCGGAT CAACAAATTA AGTTTTGGTC ACCATTTCCC TGGATTGGTA AATCCTCTTG
ATGGGGTAAA GTGGGTGCAA GGACCAACTC ATGGCATGTA CCAGTATTTT ATAAAGGTGG TCCCTACAAT ATACACAGAC
ATTAGAGGTC GTGTTATCCA TTCAAATCAG TATTCCGTGA CTGAGCATTT CAAGAGTTCA GAGCTGGGTG TTGCAGTTCC
TGGAGTTTTC TTCTTTTACG ACATATCTCC AATCAAGGTC AACTTTAAAG AGGAACATAT TCCATTCTTA CATTTCCTAA
CTAATATTTG TGCAATTATT GGAGGTGTAT TTACCGTTGC AGGGATCATA GATTCATCAA TATATTATGG TCAGAGAACA
ATCAAGAAGA AGATGGAGCT TGGAAAATAT AGATGATTTG GTCACATTCT GCATGAAGAG TCTTCTTTTG CTGTGTACTT
GGTTGGGTGG TGCATTGAGT ATAGTTTATA ACATGGTATA TCATGTGCAC ATGATGCCAA GGGTTAAGCA GAGCCGTAGA
TTTAGTTGAT GCATGAAGTG TATTTTTGGA TCATGATTTT TCATTCGGGT GTAGCAATTT AATTTCAGTT GCTACTTTGG
TGGCTTTTTA ATAGTGAAGG ATGAAGATGA GGAATGCAGA GTTTATTGGG AACTTCATGA TATTTTTGCT GCATAGTGCA
TGAAATGGGT GATTATGCAT AACATACGGT TCTTGTATTG CTATCACAGC TACATTGTAA TCTTTGCCAA TATTTTCATT
GAACTGAAGA ATTTGAATCT TTTGTCCCGT TTCCTATCTA CTTATTTAAT GTTCATGTTT CAAGAGCAGC AATGCTATTT
TATGAGTGAG AAATGTTTCA GATGCTTCTT ATAGCAGCAA CTCTCTCATA TCAAATTTGA CTTAGTTATA CTCATGCTCT
ATTTAGTTTA GATTGGGAAT GCAAG

>Vigan.01G155900.01
ATGGATAAAG TCTTCAACAG GCTCCGCAAT TTGGACGCTT ACCCAAAAGT CAATGAAGAT TTTTACAGCC GCACGCTCGC
CGGCGGCGTC GTCACCGTCG TTTCCGCGGC TGTCATGCTC TTCCTCTTCT TTTCCGAGCT AAATTTATAT CTCTATACAG
TTACAGAGAG TACGCTTTTG GTGGATACTT CAAGAGGAGA TACCTTGCAC ATCAATTTTG ATGTCACTTT TCCTGCTGTT
CGATGTTCAA TACTCAGTTT AGATGCAATG GATATTAGTG GGGAGCAGCA CCTTGACATA CGACATAATA TAGTGAAGAA
AAGAATTGAT GCTAATGGTA ATGTGGTAGA AGAGAGGAAG GATGGAATTG GTGCACCAAA GATTGAGAGA CCCTTACAAA
AACATGGTGG CAGACTTGGA CATGATGAGA AGTATTGTGG TTCATGTTTT GGTGCGGAAG AGTCAGATGA ACACTGTTGT
AATTCTTGTG AAGAAGTTCG TGAAGCATAT AGGAAAAAGG GGTGGGCTCT GACAAATATG GATTTGATTG ATCAGTGTCA
AAGAGAAGGT TACGTGCAAA GGGTAAAGGA TGAAGAAGGT GAAGGATGCA ATATTCAAGG ATCTCTTGAA GTTAATAAAG
TGGCAGGAAA TTTTCATTTT GCAACCGGGA AAAGCTTTCT TCAGTCTGCT ATATTTCTTG CTGATCTTCT TGCTTTACAG
GATAATCATT ATAATATAAG CCATCGGATC AACAAATTAA GTTTTGGTCA CCATTTCCCT GGATTGGTAA ATCCTCTTGA
TGGGGTAAAG TGGGTGCAAG GACCAACTCA TGGCATGTAC CAGTATTTTA TAAAGGTGGT CCCTACAATA TACACAGACA
TTAGAGGTCG TGTTATCCAT TCAAATCAGT ATTCCGTGAC TGAGCATTTC AAGAGTTCAG AGCTGGGTGT TGCAGTTCCT
GGAGTTTTCT TCTTTTACGA CATATCTCCA ATCAAGGTCA ACTTTAAAGA GGAACATATT CCATTCTTAC ATTTCCTAAC
TAATATTTGT GCAATTATTG GAGGTGTATT TACCGTTGCA GGGATCATAG ATTCATCAAT ATATTATGGT CAGAGAACAA
TCAAGAAGAA GATGGAGCTT GGAAAATATA GATGA

>Vigan.01G155900.01
MDKVFNRLRN LDAYPKVNED FYSRTLAGGV VTVVSAAVML FLFFSELNLY LYTVTESTLL VDTSRGDTLH INFDVTFPAV
RCSILSLDAM DISGEQHLDI RHNIVKKRID ANGNVVEERK DGIGAPKIER PLQKHGGRLG HDEKYCGSCF GAEESDEHCC
NSCEEVREAY RKKGWALTNM DLIDQCQREG YVQRVKDEEG EGCNIQGSLE VNKVAGNFHF ATGKSFLQSA IFLADLLALQ
DNHYNISHRI NKLSFGHHFP GLVNPLDGVK WVQGPTHGMY QYFIKVVPTI YTDIRGRVIH SNQYSVTEHF KSSELGVAVP
GVFFFYDISP IKVNFKEEHI PFLHFLTNIC AIIGGVFTVA GIIDSSIYYG QRTIKKKMEL GKYR*