GBrowse Details

Vigan.01G170500.01

Basic Information:
Name: Vigan.01G170500.01
Multiple alignment
Variant Information
Position: Chr01:19618837..19623051 (- strand)
Length: 4215
Functional Information:
Description: Similar to Uncharacterized protein. [I1KRD4, Glycine max]
GO: Biological Process: proteolysis (GO:0006508)
Cellular Component: proteasome regulatory particle (GO:0005838)
InterPro: SAC3/GANP/Nin1/mts3/eIF-3 p25 (IPR005062)
26S proteasome non-ATPase regulatory subunit Rpn12 (IPR006746)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:99.85,46.14,54.97,34.97,70.09,68.96,44.08,39.64
Arabidopsis thaliana homolog: AT1G64520.1
Automatic updates:
Name: NM_001254242 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 26S proteasome non-ATPase regulatory subunit RPN12A-like (LOC100785835), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:19618837..19619367 (- strand)
Length: 531
Type: three_prime_UTR
Position: Chr01:19619368..19619508 (- strand)
Length: 141
Type: CDS
Position: Chr01:19620265..19620376 (- strand)
Length: 112
Type: CDS
Position: Chr01:19620730..19620993 (- strand)
Length: 264
Type: CDS
Position: Chr01:19621231..19621333 (- strand)
Length: 103
Type: CDS
Position: Chr01:19622099..19622177 (- strand)
Length: 79
Type: CDS
Position: Chr01:19622795..19622899 (- strand)
Length: 105
Type: CDS
Position: Chr01:19622900..19623051 (- strand)
Length: 152
Type: five_prime_UTR


>Vigan.01G170500.01
TTTTAAAGCC CGAGGCCAAT TTCATAGAAA TATGAAAGTC GCGAAGCGTT CAGTATCCCT GTGATTCTTG TCTACTAAGG
TTTTCGTTGG GAGCACTCAA GGTATTCTTT TTCGAAGTTG TGAAAAGCAC TGCACATCCA AATTGAGAAG ACATGGATCC
CAAGCTAACC GAGGTTTCTC AGCTCTTCGA TCGCTTTAAG GCTTCGTTTC TCAGGAACGA CTACGACAAC TGTTCCAATC
TCCTTTCTCA ACTAAAGGTG TTACTGACAG GGTTCAGAAG CCTTCCACCA TTGTTTGCAG ATACACCTAA TGCTGTTCAT
GAGTTAACAA TAGCAAGGGA TATATACGAG CATGCTGTTG TCCTTAGTGT GAAAACTGAG GATCAAGATG CCTTTGAGAG
GGATTTCTTC CAGTTGAAAC CTTATTATAC AGATGCCTGC AATCGGCTTC CACCATCACC TCAGGAGTAC CCAATACTCG
GTCTCAACCT GTTGAGACTA CTTGTGCAGA ATAGGATTGC TGAATTCCAT ACTGAGTTGG AATTACTTTC TTCTGCTGCA
CTAGAGAATC CTTGCATTAA GCATGCCGTG GAGTTGGAAC AATCTTTTAT GGAAGGAGCA TATAATCGTG TCTTGAGTGC
TAGACAGACT GTACCGCATG ATACATACGT TTATTTCATG GATCTCTTGG CAAAGACTGT CAGAGATGAA ATAGCAGGCT
GTAGCGAGAA GGCATATGAC TATCTTTCAA TTAAGGATGC AAAGCAAATG TTATTGTTCT CATTAGATCA GGAACTCCTG
GAATATATAA AAGAGGAACA TCCTGAGTGG GATATAAAGA ATGGTAGTGT CTTTTTCCAA AAGGCAAAAG AATCTGCTCC
GTGCAAAGAA ATTCCCTCTC TGCAGCTCAT CAACCAGACA CTTAGTTATG CTAGGGAGTT GGAGAGGATT GTCTGAAAAG
ATATGCGAAG GCGGCTTTTG TGTTTCAAAA TTTCTAGGTG CCTGGATAAT AGCTGCCTGC TAATATTGTC ATCTGAAATT
GTTTAATTCT CATTCAATGC GGAACTAAAA AATTGTTCAC CACTGTATTT TGATCATTTA TGGTTACTTT TATTTTTTTA
CATCGTGCTC TGGAAACAGA AAAAAATGTT TCATACGTAC TTTTTATTTT TTTATTTTGA TGATTATATG ATTCATGATT
CTGTAGTCTA AATTTTAAAG CCATAGAAAG GTTCATACCC AGAATATGGG GATATAAAAT TTCCAAGTCA TGCATTTGGT
GACTTGGGTG TTGGGTTTCC TTTTTAGAAT GATGTGCTCG GCTGTTGGGT TTTCTTTTTC TAAACAAATC AAATCAGCAA
ATTGTATGTG ATAGTAGTTA GGAGAAAATA TTGAGATCTG ACTTATTTAT TTCTATCGTA ATTTGTGAAC CCTTATGGAG
TGTTGTTTTT GTGTACAGTC ACGACGATAA AAATATTTGC TTTCAAC

>Vigan.01G170500.01
ATGGATCCCA AGCTAACCGA GGTTTCTCAG CTCTTCGATC GCTTTAAGGC TTCGTTTCTC AGGAACGACT ACGACAACTG
TTCCAATCTC CTTTCTCAAC TAAAGGTGTT ACTGACAGGG TTCAGAAGCC TTCCACCATT GTTTGCAGAT ACACCTAATG
CTGTTCATGA GTTAACAATA GCAAGGGATA TATACGAGCA TGCTGTTGTC CTTAGTGTGA AAACTGAGGA TCAAGATGCC
TTTGAGAGGG ATTTCTTCCA GTTGAAACCT TATTATACAG ATGCCTGCAA TCGGCTTCCA CCATCACCTC AGGAGTACCC
AATACTCGGT CTCAACCTGT TGAGACTACT TGTGCAGAAT AGGATTGCTG AATTCCATAC TGAGTTGGAA TTACTTTCTT
CTGCTGCACT AGAGAATCCT TGCATTAAGC ATGCCGTGGA GTTGGAACAA TCTTTTATGG AAGGAGCATA TAATCGTGTC
TTGAGTGCTA GACAGACTGT ACCGCATGAT ACATACGTTT ATTTCATGGA TCTCTTGGCA AAGACTGTCA GAGATGAAAT
AGCAGGCTGT AGCGAGAAGG CATATGACTA TCTTTCAATT AAGGATGCAA AGCAAATGTT ATTGTTCTCA TTAGATCAGG
AACTCCTGGA ATATATAAAA GAGGAACATC CTGAGTGGGA TATAAAGAAT GGTAGTGTCT TTTTCCAAAA GGCAAAAGAA
TCTGCTCCGT GCAAAGAAAT TCCCTCTCTG CAGCTCATCA ACCAGACACT TAGTTATGCT AGGGAGTTGG AGAGGATTGT
CTGA

>Vigan.01G170500.01
MDPKLTEVSQ LFDRFKASFL RNDYDNCSNL LSQLKVLLTG FRSLPPLFAD TPNAVHELTI ARDIYEHAVV LSVKTEDQDA
FERDFFQLKP YYTDACNRLP PSPQEYPILG LNLLRLLVQN RIAEFHTELE LLSSAALENP CIKHAVELEQ SFMEGAYNRV
LSARQTVPHD TYVYFMDLLA KTVRDEIAGC SEKAYDYLSI KDAKQMLLFS LDQELLEYIK EEHPEWDIKN GSVFFQKAKE
SAPCKEIPSL QLINQTLSYA RELERIV*