GBrowse Details

Vigan.01G173500.01

Basic Information:
Name: Vigan.01G173500.01
Multiple alignment
Variant Information
Position: Chr01:20066978..20091136 (+ strand)
Length: 24159
Functional Information:
Description: Similar to uncharacterized protein. [C6SVV0, Glycine max]
InterPro: High mobility group box domain (IPR009071)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:14.74,7.88,6.39,14.12,7.73,2.01,8.27,7.31
Arabidopsis thaliana homolog: AT2G34450.2
Automatic updates:
Name: NM_001250910 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max HMG-box domain-containing DNA-binding protein (LOC100305607), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:20066978..20067009 (+ strand)
Length: 32
Type: five_prime_UTR
Position: Chr01:20067010..20067071 (+ strand)
Length: 62
Type: CDS
Position: Chr01:20067953..20068108 (+ strand)
Length: 156
Type: CDS
Position: Chr01:20068813..20068870 (+ strand)
Length: 58
Type: CDS
Position: Chr01:20069132..20069176 (+ strand)
Length: 45
Type: CDS
Position: Chr01:20090543..20090623 (+ strand)
Length: 81
Type: CDS
Position: Chr01:20090714..20090764 (+ strand)
Length: 51
Type: CDS
Position: Chr01:20090765..20091136 (+ strand)
Length: 372
Type: three_prime_UTR


>Vigan.01G173500.01
AAATTGCAAG ACTCTGTTGT CTCCGAACAA GCATGGCGAA AAAGGCAAAA GGGTCTCACT CTACTTCTTC GGCCTCTGCC
TCTTCCGCTT CTGGTAAACT AGTTTTGAGG ATTAAATCAA ATGAGGGAAT CAAGAGATCC GTGCGGCAGA CTAATTCAAG
AAAGAAACTC AAAGCAAAAC TAAAGAAGAA CAAGCGGAAG TTTGATGCTA TGAAGCCGAA GAAACCTCCT ACAGCTTTCT
TCTACTTCTT GGAGGATTTT CGTAAAGAAT TTCAAGAGAA GAATCCGGAT GTAAAGTCAA TGCGTGATAT TGGCAAGGCA
TGTGGAGAGA AATGGAAAAC AATGACTTAT GAGGAGAAGG TTCAATACTA CGATGTAGCA ACAGACAAAC GTGCAGAGTT
TGACAGGGCA ATGGCAGAAT ATAACAAGAA AATAGAAAGT GGAGAGTTTG ATGAAACTGA CGAGGAATCA GAGTTTGATG
AGTAAACAAA CTATTTTATT TCTTACTAAG GTTGGACCTG TATTAATTGA AACTATCTGG ACTAACAGTT GTATATTCAG
TTTTTGTCTG TCCTTGTTGA TAATTATCAT TTCTGTGTCA TATGTAAAGT ATATTAGTTG TATTTAGATG ATTAAAATGA
CAATTTGGGC ATATATATAT TGAGATATCA AATACTGGGT AAAAGTCAAT CAGAGAGAAA ACATAACTGG TGCACTTGAT
CGATTCATGA GTGTAACACT ATTTCCTTGT GTCAACCTAG TATTTAGGGA TACCTTCAAA ATATTATATT CTTGAATGTT
ATTATGTAAC AGCTTTGTAG TGTTTACATG CTGGAGTGGG GTGCTTACAA ACCTGTG

>Vigan.01G173500.01
ATGGCGAAAA AGGCAAAAGG GTCTCACTCT ACTTCTTCGG CCTCTGCCTC TTCCGCTTCT GGTAAACTAG TTTTGAGGAT
TAAATCAAAT GAGGGAATCA AGAGATCCGT GCGGCAGACT AATTCAAGAA AGAAACTCAA AGCAAAACTA AAGAAGAACA
AGCGGAAGTT TGATGCTATG AAGCCGAAGA AACCTCCTAC AGCTTTCTTC TACTTCTTGG AGGATTTTCG TAAAGAATTT
CAAGAGAAGA ATCCGGATGT AAAGTCAATG CGTGATATTG GCAAGGCATG TGGAGAGAAA TGGAAAACAA TGACTTATGA
GGAGAAGGTT CAATACTACG ATGTAGCAAC AGACAAACGT GCAGAGTTTG ACAGGGCAAT GGCAGAATAT AACAAGAAAA
TAGAAAGTGG AGAGTTTGAT GAAACTGACG AGGAATCAGA GTTTGATGAG TAA

>Vigan.01G173500.01
MAKKAKGSHS TSSASASSAS GKLVLRIKSN EGIKRSVRQT NSRKKLKAKL KKNKRKFDAM KPKKPPTAFF YFLEDFRKEF
QEKNPDVKSM RDIGKACGEK WKTMTYEEKV QYYDVATDKR AEFDRAMAEY NKKIESGEFD ETDEESEFDE *