GBrowse Details

Vigan.01G174500.01

Basic Information:
Name: Vigan.01G174500.01
Multiple alignment
Variant Information
Position: Chr01:20222744..20232530 (+ strand)
Length: 9787
Functional Information:
Description: Similar to 3-oxoacyl-[acyl-carrier-protein] synthase. [V7CPR5, Phaseolus vulgaris]
GO: Biological Process: fatty acid biosynthetic process (GO:0006633)
Biological Process: metabolic process (GO:0008152)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747)
InterPro: Beta-ketoacyl synthase, N-terminal (IPR014030)
Beta-ketoacyl synthase, C-terminal (IPR014031)
Thiolase-like, subgroup (IPR016038)
Thiolase-like (IPR016039)
3-oxoacyl-[acyl-carrier-protein] synthase 2 (IPR017568)
Beta-ketoacyl synthase, active site (IPR018201)
Polyketide synthase, beta-ketoacyl synthase domain (IPR020841)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:16.65,46.53,26.95,27.39,65.19,57.86,24.23,26.13
Arabidopsis thaliana homolog: AT5G46290.3
Automatic updates:
Name: NM_001250725 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max beta-ketoacyl-ACP synthetase I-2 (LOC548028), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251681 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max beta-ketoacyl-ACP synthetase I (KASI), mRNA.
PubMed ID: 28235823 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:20222744..20222866 (+ strand)
Length: 123
Type: five_prime_UTR
Position: Chr01:20222867..20223316 (+ strand)
Length: 450
Type: CDS
Position: Chr01:20223576..20224007 (+ strand)
Length: 432
Type: CDS
Position: Chr01:20224412..20224585 (+ strand)
Length: 174
Type: CDS
Position: Chr01:20230995..20231108 (+ strand)
Length: 114
Type: CDS
Position: Chr01:20231235..20231336 (+ strand)
Length: 102
Type: CDS
Position: Chr01:20231892..20231958 (+ strand)
Length: 67
Type: CDS
Position: Chr01:20232043..20232110 (+ strand)
Length: 68
Type: CDS
Position: Chr01:20232111..20232530 (+ strand)
Length: 420
Type: three_prime_UTR


>Vigan.01G174500.01
AAAATGAGCT GAAAATAAAT AAGACCACTT GTTAGTTTGA TTGTGTAGTT GCCACAGAGC ACAGAGCACA GAGCACAGAG
TAGAGAGTTG TTTTGTGTTC ACTGCATCGC ATTCTCCGCC ATCATGCAAG CGCTAAACTC GCTCACCCTC CGCACTTCTC
CCTTGGACCC GCTTCGCGCT CCCAACAATG CTGCCAACAG AAGAGCTGCC GCCTCCAAGC GCGTCTTCTT CGTCTCCGCC
ACGGCGGCGC CCAAGGTCTC TGCCCCGCAG CGCCAGAAGG ACCCCAAGAA GCGCGTGGTG ATCACCGGAA TGGGCCTCGC
GTCCGTGTTC GGCAACGACG TCGAGGGTTA TTACGAGAAG CTCCTTACCG GAGAGAGTGG CATCACCGCC ATCGATCGCT
TCGACGCGTC CAAGTTTCCC ACCCGCTTCG GCGGCCAGAT CCGCGGCTTC TCTGCCGAGG GCTACATTGA CGGCAAGAAC
GACCGCCGCC TCGACGACTG TCTCCGCTAC TGCATTGTCG CCGGCAAGAA GGCCCTCGAA AGCGCCGACC TCGCCGCGGA
TAACCTCACC AAGCTTGATA AGGAGCGTGC GGGTGTTCTA GTGGGATCCG GAATGGGAGG CCTAACGGTG TTTTCCGACG
GTGTTCAGGC TCTGATTGAG AAAGGGCACC GGAAGATAAC GCCGTTTTTC ATTCCGTATG CCATTACTAA CATGGGTTCG
GCTTTGCTTG GGATTGACCT CGGGTTCATG GGTCCTAACT ATTCTATTTC CACTGCTTGT GCTACCTCCA ATTATTGCTT
TTATGCTGCG GCGAACCATA TACGGAGAGG GGAGGCTGAT TTGATGATAG CGGGTGGAAC TGAGGCTGCC ATCATTCCCA
TTGGGTTAGG AGGTTTCGTC GCTTGCAGAG CGCTTTCCCA GAGGAATGAT GACCCCAAAA CTGCTTCAAG GCCGTGGGAT
CAGGGGCGTG ATGGCTTTGT TATGGGTGAA GGTGCTGGAG TTTTGGTGAT GGAGAGCTTG GAACATGCCA TGAAGCGAGG
CGCTCCTATA ATTGCTGAAT ACTTGGGAGG TGCTGTTAAC TGTGATGCTT ATCATATGAC AGATCCAAGG TCTGATGGAC
TTGGTGTGTC TTCATGCATT CAGAGCAGCC TTGAAGATGC TGGTGTGTCA CCTGAGGAGG TCAACTACAT AAACGCACAT
GCAACTTCCA CTCTTGCTGG CGACTTGGCA GAGATTAATG CTATTAAGAA GGTTTTCAAG GACACTTCCG GCATCAAAAT
TAATGCCACC AAGTCTATGA TAGGACACTG CCTTGGTGCA GCTGGGGGGT TGGAAGCCAT TGCCACTGTT AAAGCCATAA
CAACAGGATG GCTGCATCCA ACAATCAATC AATTTAACCC AGAACCCGCA GTCGATTTTG ATACAGTGGC AAATGTCAAG
CAGCAGCATG AAGTCAATGT TGCTATTTCA AATTCATTTG GATTTGGTGG ACACAACTCT GTGGTGGCAT TCTCTGCTTT
CAGGCCCTGA TTGCCCAGCT TCACTTGTCT ATCTACACTT AATGAGGAAC ACGGGTTTAA GTTTTTTGAA ATTTTGTTCT
CTCTAGATCA CTGAGGCTGT TTATTCTGAT TGAGCCATCT CATATAAAAG CCGTAGGCCT GTAGTTCAGT TTGTGCTAAT
TGTGACTTGA CAGTTAGCTA TAAGTCTGTT TTAATGAGTA GAAGTTTTTG AATGTAGCTG GAAGTCTTTA GTTTGGAGGT
ATACAGAAGG ATAAAATGCC AAATGAGCAA TTCTTCACCA TTCTTCCTTA TTGTTTGAGT AAAGATATTT TTCATCAGGC
TTGTATCTAA GATACTTGCT GATTGCTATG AATCTTTGTA GCATCATGGG CTTTATTTCA ATCATTCATG AGTTTCAAGA
TAAATACTTT GCTTTTTATG CATTGTTAAG 

>Vigan.01G174500.01
ATGCAAGCGC TAAACTCGCT CACCCTCCGC ACTTCTCCCT TGGACCCGCT TCGCGCTCCC AACAATGCTG CCAACAGAAG
AGCTGCCGCC TCCAAGCGCG TCTTCTTCGT CTCCGCCACG GCGGCGCCCA AGGTCTCTGC CCCGCAGCGC CAGAAGGACC
CCAAGAAGCG CGTGGTGATC ACCGGAATGG GCCTCGCGTC CGTGTTCGGC AACGACGTCG AGGGTTATTA CGAGAAGCTC
CTTACCGGAG AGAGTGGCAT CACCGCCATC GATCGCTTCG ACGCGTCCAA GTTTCCCACC CGCTTCGGCG GCCAGATCCG
CGGCTTCTCT GCCGAGGGCT ACATTGACGG CAAGAACGAC CGCCGCCTCG ACGACTGTCT CCGCTACTGC ATTGTCGCCG
GCAAGAAGGC CCTCGAAAGC GCCGACCTCG CCGCGGATAA CCTCACCAAG CTTGATAAGG AGCGTGCGGG TGTTCTAGTG
GGATCCGGAA TGGGAGGCCT AACGGTGTTT TCCGACGGTG TTCAGGCTCT GATTGAGAAA GGGCACCGGA AGATAACGCC
GTTTTTCATT CCGTATGCCA TTACTAACAT GGGTTCGGCT TTGCTTGGGA TTGACCTCGG GTTCATGGGT CCTAACTATT
CTATTTCCAC TGCTTGTGCT ACCTCCAATT ATTGCTTTTA TGCTGCGGCG AACCATATAC GGAGAGGGGA GGCTGATTTG
ATGATAGCGG GTGGAACTGA GGCTGCCATC ATTCCCATTG GGTTAGGAGG TTTCGTCGCT TGCAGAGCGC TTTCCCAGAG
GAATGATGAC CCCAAAACTG CTTCAAGGCC GTGGGATCAG GGGCGTGATG GCTTTGTTAT GGGTGAAGGT GCTGGAGTTT
TGGTGATGGA GAGCTTGGAA CATGCCATGA AGCGAGGCGC TCCTATAATT GCTGAATACT TGGGAGGTGC TGTTAACTGT
GATGCTTATC ATATGACAGA TCCAAGGTCT GATGGACTTG GTGTGTCTTC ATGCATTCAG AGCAGCCTTG AAGATGCTGG
TGTGTCACCT GAGGAGGTCA ACTACATAAA CGCACATGCA ACTTCCACTC TTGCTGGCGA CTTGGCAGAG ATTAATGCTA
TTAAGAAGGT TTTCAAGGAC ACTTCCGGCA TCAAAATTAA TGCCACCAAG TCTATGATAG GACACTGCCT TGGTGCAGCT
GGGGGGTTGG AAGCCATTGC CACTGTTAAA GCCATAACAA CAGGATGGCT GCATCCAACA ATCAATCAAT TTAACCCAGA
ACCCGCAGTC GATTTTGATA CAGTGGCAAA TGTCAAGCAG CAGCATGAAG TCAATGTTGC TATTTCAAAT TCATTTGGAT
TTGGTGGACA CAACTCTGTG GTGGCATTCT CTGCTTTCAG GCCCTGA

>Vigan.01G174500.01
MQALNSLTLR TSPLDPLRAP NNAANRRAAA SKRVFFVSAT AAPKVSAPQR QKDPKKRVVI TGMGLASVFG NDVEGYYEKL
LTGESGITAI DRFDASKFPT RFGGQIRGFS AEGYIDGKND RRLDDCLRYC IVAGKKALES ADLAADNLTK LDKERAGVLV
GSGMGGLTVF SDGVQALIEK GHRKITPFFI PYAITNMGSA LLGIDLGFMG PNYSISTACA TSNYCFYAAA NHIRRGEADL
MIAGGTEAAI IPIGLGGFVA CRALSQRNDD PKTASRPWDQ GRDGFVMGEG AGVLVMESLE HAMKRGAPII AEYLGGAVNC
DAYHMTDPRS DGLGVSSCIQ SSLEDAGVSP EEVNYINAHA TSTLAGDLAE INAIKKVFKD TSGIKINATK SMIGHCLGAA
GGLEAIATVK AITTGWLHPT INQFNPEPAV DFDTVANVKQ QHEVNVAISN SFGFGGHNSV VAFSAFRP*