GBrowse Details

Vigan.01G175100.01

Basic Information:
Name: Vigan.01G175100.01
Multiple alignment
Variant Information
Position: Chr01:20324360..20328883 (+ strand)
Length: 4524
Functional Information:
Description: Similar to Urease accessory protein ureG. [T2DLW5, Phaseolus vulgaris]
GO: Biological Process: GTP catabolic process (GO:0006184)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: nickel cation binding (GO:0016151)
Molecular Function: metallochaperone activity (GO:0016530)
Molecular Function: protein homodimerization activity (GO:0042803)
InterPro: CobW/HypB/UreG domain (IPR003495)
Urease accessory protein UreG (IPR004400)
[NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase (IPR012202)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:109.83,151.37,6.17,4.57,12.02,11.71,20.06,5.56
Arabidopsis thaliana homolog: AT2G34470.2
Automatic updates:
Name: NM_001251306 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max Ni-binding urease accessory protein UreG (EU3), mRNA.
PubMed ID: 22271305 NCBI(pubmed)
10652150 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:20324360..20324473 (+ strand)
Length: 114
Type: five_prime_UTR
Position: Chr01:20324474..20324742 (+ strand)
Length: 269
Type: CDS
Position: Chr01:20324816..20324876 (+ strand)
Length: 61
Type: CDS
Position: Chr01:20324973..20325174 (+ strand)
Length: 202
Type: CDS
Position: Chr01:20325453..20325574 (+ strand)
Length: 122
Type: CDS
Position: Chr01:20325681..20325785 (+ strand)
Length: 105
Type: CDS
Position: Chr01:20326370..20326453 (+ strand)
Length: 84
Type: CDS
Position: Chr01:20326454..20328883 (+ strand)
Length: 2430
Type: three_prime_UTR


>Vigan.01G175100.01
AAAAATCTGT ATATTTTACT AGACCTTAGT GCTTGGATTG GAGGCGGTTT GTGCTTTGGT TTTCTTTCTA TTTCCAGAGT
CCATCACAGT GACAGTTAGC ATCAGACACA TTCAATGGCT TCTCACGGCG AACATCACCA CCACCACCAT CATGATCATG
GTCATGATCA CGATCACGAA CATGATCATG ACGGTGAAAA GGGAGAGGGG AAGTCATGGG TAGGCAAGGA TGGTAGGGTG
TACCACAGCC ATGATGGTCT GGCGCCGCAT TCTCACGAAC CCATCTACTC TCCTGGCTTC TTCAGCAGAA GAGCCCCTCC
TCTTAACAGG AATTTCAACG AAAGAGCCTT CACTGTCGGA ATTGGTGGAC CTGTCGGCAC TGGGAAAACA GCTCTCATGT
TGGCCCTTTG TGAATTCCTT CGGGATAACT ACAGTCTCGC TGCTGTGACT AATGATATAT TCACCAAAGA GGATGGTGAA
TTCTTGGTGA AGCACAAAGC TCTTCCAGAA GAAAGGATAC GCGCTGTGGA AACTGGGGGC TGCCCACATG CTGCCATTCG
GGAAGACATT AGTATTAATC TTGGACCTCT GGAGGAGCTT TCTAACCTCT TCAAAGCAGA TATACTTCTT TGTGAATCCG
GGGGAGATAA CCTGGCTGCC AATTTTAGCA GGGAATTGGC TGACTACATA ATTTACATAA TAGATGTATC TGGTGGTGAT
AAAATTCCTA GGAAAGGTGG TCCTGGAATC ACACAAGCTG ATCTCCTTGT GATAAACAAG ACTGACCTTG CTCCGGCAAT
TGGGGCTGAT TTAGCAGTCA TGCAGCGGGA TGCTTTGCGG ATGAGAGACG GAGGACCATT TGTCTTTGCA CAGGTGAAGC
ATAAGGTTGG AGTAGAAGAA ATTGTGAATC ATGTCTTACA GGCGTGGGAA GCAACGACAG GGAATAAACT CCATTAACGT
GTCTTTCTAA AATTGTTTTC TTTTTGTCGC ATATTCTGAT AGCATGTTGA GAAACAACTT CCCGAACATT CTTGTTCCTG
CATGTTACCA TAATAACTTC ATCGACATGT TACTGCTTGG ACCTATTAAT CTTTGTTACT GTCGTCAAAT GGATTGTTGT
TGTTTAAGAG TTACACAAAT GTCAAACAAT ATGGAAGTTG AACATCAAGA TAAGATATCT GTACAAACTT ATTATGAAAA
AAGAAGTATA CCCACATAGG TTGTGGTCAT AAACCAAGAC ATGAACAACA AGATATATTC AACAATTTGA AGGAAGACCA
CGACAATATA CTAAAACAAT ATCAATGTGT GGGATAAGTT GTCGAAAATA ATTTTTGATT GATTAATCAT ATTGTGTATT
TCTTTGTAAT ATCTTGCAAT TTAAATTTAC CAAAATTTAT TCAATAATTT TTAACATTTA AAAAATTTAT GTTACCGAAA
CTTAAAAACT AGTCACAAAA TTTTAAAATT AAAAATAGGA GAATCACCTG ATCGTAGATA CAACTTCATC CAACTAAGAA
ACCGATCAAT CTGAATTTGA AAAGATAGCT GAAAATGGAG AGAACTTTGA AGGAGTTGGC TAATCCAGAT ATTGGATGCA
AACCTTTGTT CGTACTGCTG CCACAATTGC AGGAAGGCGC AATCAGTTAT GAATTAACAT CAGGCCTAAT ACATTTGTTA
CCTAAATTTT ATGGACTGGC TGGAAAAGAT CCTCACAAAC ACCTGATGGA ATTGTGGTGT GTTCAATCAT GAAGCCAGCT
GAAGTGCCTG AAGAACTGAT CAAGATGAAG GCCTTCCCAT TTTCTCTCTC TGACATTGCA AAGGATTGGC TATACCTTCA
ACTTACCCCA AATTACCATT TGGAATGAGA TGAAAAGGAG GTTTCTGGAT AAAATTTTCC TGCTTCAAGA ACTGTCTCAA
TCAGGAATGA AATTAGTGGT ATAAGACAGC TTCAAAGAGA AAGTTTGTAT GATTACTAGG AGAGGTTCAA TAAGTTGTGT
TCCACATGCT CTATCTATCT ATCAGATTAG TTAATAGCTA CTGATACAAT ATTTTTATGA GGGTCTGCTG CCAATAGAGA
GGAGTATGAT AGATGCAGCC AGTGGAGGCA CACTCATGGA TACCCCTGCT GCCAGGTATT TGATATCCAA AATGGCTGAA
AACTCACAGC AATTCGATTC TAGAAATACA GGCAAAAATG TGCATGACGT AAAGACCAGT TCTACAACAG AATTTGATGG
CCAAAGGCTG GAAAATAAAA TAACCGAACT AACTTTGTTG GTCAGACAGT TAGCTATAAA AGAGCAAGTA TGCTCAGTGC
AGAAGACATG TTGAATATGT AGTTTAAATG ACCATTACCC TGACGCTTGC CCTCAGCCAA CCATGGAAAG TGTAGCTGGA
ATTTCTAGTT TCTGTCCAGG TTTCCACTTT CCAGTTTCTG CCCAAAAAAC AAATCAGCTT AGCCACTCCA TTTTAGCTTT
AGCCCATATC ACTTTTGACT ACTTGTACTG ACTTTGCAAA ATTCATTAAA AATTGTGCTA ACTTCTATTA GTGTATATTT
GTTTGTAGAG TCTTTACATT GCATGTATTA GTAGTAGATT CTGCTTTGCC GAAAGTTGGT GGTGAAAAAC TTGAAATGAT
CATTACTTTT GCTATGGATC TTGGTGAATT GCAAAGTTGT TAGAAATTGT GTTTTCATTC CGCTGGCCAA CTTCCAAAGG
AGGCTGGGGT TCCAAATTTT CAAAATTCCA CCATTTATTA TCTCTTTGCT ATTTTCTTAG TATTCTTTTT CCATTTTTCT
AGATTTTAGA GATGTATTTC ACTTACCTAT AGTATTCAGA ACAGTCTAAG ACATTTTGTG GTATTGTCTA GTAGTTAGTA
GAGATTTTCC GTGATTTTAA ATTTTAGATT CATTTTATAC GTAGAACATT CATATAGCTG GTCATTTCTC ATAGTTCATT
GTTTCACTGT TTTTCCGTTT TCTCTGCTGT TTCAATCTTT CACTGTTCAC TGCTGCAGTT TTCAGTATGA CGCTGTTCTC
AGCCAAATGT TACTCCTCAT GGTGCTATGG AAATTAAAGA TGAAGTTTCC AGAACAAAGC CTTCGAGTAA ACTGCATTTT
TTGGATTAAG AGGAAATAAC ACATGGAATT TGTGATTAGA AGAGAACAAG AGTAGAAATT TCAAAGTTAA TGAACATCAA
TTGAAGATTT TTCAAGAAAG GCAACCTGCA GTAGATGAGG AAATAAACCT GGAGTTGACA GAACCTGTGA TACAGAAATG
ATGTGCAGAA CAATTTTCAA GTTTTAGCTT TTAGGGCTTT GTTTTGAAGA ATGGATCTGC GGCGTCAAAA TTAGGGTTAA
TGATAAAACT TTTGATTTCA TATCGGG

>Vigan.01G175100.01
ATGGCTTCTC ACGGCGAACA TCACCACCAC CACCATCATG ATCATGGTCA TGATCACGAT CACGAACATG ATCATGACGG
TGAAAAGGGA GAGGGGAAGT CATGGGTAGG CAAGGATGGT AGGGTGTACC ACAGCCATGA TGGTCTGGCG CCGCATTCTC
ACGAACCCAT CTACTCTCCT GGCTTCTTCA GCAGAAGAGC CCCTCCTCTT AACAGGAATT TCAACGAAAG AGCCTTCACT
GTCGGAATTG GTGGACCTGT CGGCACTGGG AAAACAGCTC TCATGTTGGC CCTTTGTGAA TTCCTTCGGG ATAACTACAG
TCTCGCTGCT GTGACTAATG ATATATTCAC CAAAGAGGAT GGTGAATTCT TGGTGAAGCA CAAAGCTCTT CCAGAAGAAA
GGATACGCGC TGTGGAAACT GGGGGCTGCC CACATGCTGC CATTCGGGAA GACATTAGTA TTAATCTTGG ACCTCTGGAG
GAGCTTTCTA ACCTCTTCAA AGCAGATATA CTTCTTTGTG AATCCGGGGG AGATAACCTG GCTGCCAATT TTAGCAGGGA
ATTGGCTGAC TACATAATTT ACATAATAGA TGTATCTGGT GGTGATAAAA TTCCTAGGAA AGGTGGTCCT GGAATCACAC
AAGCTGATCT CCTTGTGATA AACAAGACTG ACCTTGCTCC GGCAATTGGG GCTGATTTAG CAGTCATGCA GCGGGATGCT
TTGCGGATGA GAGACGGAGG ACCATTTGTC TTTGCACAGG TGAAGCATAA GGTTGGAGTA GAAGAAATTG TGAATCATGT
CTTACAGGCG TGGGAAGCAA CGACAGGGAA TAAACTCCAT TAA

>Vigan.01G175100.01
MASHGEHHHH HHHDHGHDHD HEHDHDGEKG EGKSWVGKDG RVYHSHDGLA PHSHEPIYSP GFFSRRAPPL NRNFNERAFT
VGIGGPVGTG KTALMLALCE FLRDNYSLAA VTNDIFTKED GEFLVKHKAL PEERIRAVET GGCPHAAIRE DISINLGPLE
ELSNLFKADI LLCESGGDNL AANFSRELAD YIIYIIDVSG GDKIPRKGGP GITQADLLVI NKTDLAPAIG ADLAVMQRDA
LRMRDGGPFV FAQVKHKVGV EEIVNHVLQA WEATTGNKLH *