VIGGS:GBrowse

Vigan.01G175300.01

Basic Information:

Name:	Vigan.01G175300.01 Multiple alignment Variant Information
Position:	Chr01:20350958..20356537 (+ strand)
Length:	5580

Functional Information:

Description:	Similar to DNA-directed RNA polymerase II subunit RPB7. [P46279, Glycine max]
GO:	Biological Process: transcription, DNA-dependent (GO:0006351)
	Molecular Function: RNA binding (GO:0003723)
	Molecular Function: DNA-directed RNA polymerase activity (GO:0003899)
InterPro:	Ribosomal protein S1, RNA-binding domain (IPR003029)
	RNA polymerase Rpb7, N-terminal (IPR005576)
	Nucleic acid-binding, OB-fold (IPR012340)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:37.01,28.98,21.90,29.76,37.03,35.09,36.85,25.10
Arabidopsis thaliana homolog:	AT5G59180.1

Automatic updates:

Name:	NM_001250053 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max DNA-directed RNA polymerase II subunit RPB7 (RNA polymerase II), mRNA.
PubMed ID:	1429663 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:20350958..20351356 (+ strand)
Length:	399
Type:	five_prime_UTR

Position:	Chr01:20351357..20351472 (+ strand)
Length:	116
Type:	CDS

Position:	Chr01:20351711..20351876 (+ strand)
Length:	166
Type:	CDS

Position:	Chr01:20351972..20352022 (+ strand)
Length:	51
Type:	CDS

Position:	Chr01:20355134..20355199 (+ strand)
Length:	66
Type:	CDS

Position:	Chr01:20355326..20355394 (+ strand)
Length:	69
Type:	CDS

Position:	Chr01:20356255..20356317 (+ strand)
Length:	63
Type:	CDS

Position:	Chr01:20356318..20356537 (+ strand)
Length:	220
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G175300.01
GTTACACCAT CAAACTCTTG AATTGAAAAC CCTAATATTA GGAATCACAA TCACACTGTT CTATGTTTGT TTTTTCGTTT
ATCACAGAGG CTAATATATG ACGTTGTTTC TCTCTAAATT TCAGCATATC TTACTTCACT TTGACCATTG AAGTTCGCAT
ACTCAGTGTT ATTGCTCTTC TACTTCGGTA TGCTCCTGCT TCTCGCATTT AGTATAACAA TCGAAGTTTA GAACTTTGTT
GAGAAGGATT GAACATAATA TTCATTAGGT TTTAGGATTT TTATATTAGA ATTTGGTTTT TTGTTTTTTT ATAGTTGGAG
TCTATTCTTG TTCTGCTTTT TGTGGCCAGA CGTAACTGTC AAGGTTGGGT AAGAAGGGAG GAAAAGGAGA AACGCGAAAA
TGTTCTTCCA CATAGTGCTG GAGCGAAATA TGCAGCTCCA TCCACGCTAC TTTGGTCGTA ACCTTCGTGA TAACCTTGTT
TCCAAGCTAA TGAAAGATGT GGAAGGCACT TGCAGTGGTC GACATGGATT TGTGGTGGCA GTTACAGGGA TAGAAAACAT
AGGGAAAGGG CTAATTCGTG ATGGAACAGG GTTTGTGACA TTTCCAGTTA AGTACCAATG TGTTGTCTTC AGACCATTTA
AGGGGGAGAT CTTGGAAGCT GTCGTCACCA TGGTGAACAA GATGGGATTT TTTGCTGAAG CTGGACCTGT ACAAATCTTT
GTTTCCAACC ACTTGATTCC GGATGATATG GAGTTCCAGT CTGGAGACAT GCCAAATTAC ACTACTTCAG ATGGATCTGT
TAAGATTCAA AAAGATAGTG AAGTTAGACT AAAGATAATT GGGACTCGAG TGGATGCTAC TGAAATTTTC TGCATAGGTA
CCATAAAAGA TGATTTCTTG GGTGTGATCA ACGACCCTGC AACAGTTTAA ATACCCCTTT CTGTACTCTT TTATCGTATA
TAGTTTACAT GACTTGGGTT TTCCCACCTT GAATCCTCCA ACAATATTGT GTTGTATTAG TCGACTGTTA AAAGTACCAA
GTCGTTAAAT TTTGGTTCCA GAATTAATAT TCAACTCCAC AAGTAATTTT AGGTGTGTGT AATAGCTTCA AATTTAGAGG
AAATTACATT TTTATTTTTA TTTCAAATTT

[show][hide][copy]CDS

>Vigan.01G175300.01
ATGTTCTTCC ACATAGTGCT GGAGCGAAAT ATGCAGCTCC ATCCACGCTA CTTTGGTCGT AACCTTCGTG ATAACCTTGT
TTCCAAGCTA ATGAAAGATG TGGAAGGCAC TTGCAGTGGT CGACATGGAT TTGTGGTGGC AGTTACAGGG ATAGAAAACA
TAGGGAAAGG GCTAATTCGT GATGGAACAG GGTTTGTGAC ATTTCCAGTT AAGTACCAAT GTGTTGTCTT CAGACCATTT
AAGGGGGAGA TCTTGGAAGC TGTCGTCACC ATGGTGAACA AGATGGGATT TTTTGCTGAA GCTGGACCTG TACAAATCTT
TGTTTCCAAC CACTTGATTC CGGATGATAT GGAGTTCCAG TCTGGAGACA TGCCAAATTA CACTACTTCA GATGGATCTG
TTAAGATTCA AAAAGATAGT GAAGTTAGAC TAAAGATAAT TGGGACTCGA GTGGATGCTA CTGAAATTTT CTGCATAGGT
ACCATAAAAG ATGATTTCTT GGGTGTGATC AACGACCCTG CAACAGTTTA A

[show][hide][copy]PROTEIN

>Vigan.01G175300.01
MFFHIVLERN MQLHPRYFGR NLRDNLVSKL MKDVEGTCSG RHGFVVAVTG IENIGKGLIR DGTGFVTFPV KYQCVVFRPF
KGEILEAVVT MVNKMGFFAE AGPVQIFVSN HLIPDDMEFQ SGDMPNYTTS DGSVKIQKDS EVRLKIIGTR VDATEIFCIG
TIKDDFLGVI NDPATV*