GBrowse Details

Vigan.01G177500.01

Basic Information:
Name: Vigan.01G177500.01
Multiple alignment
Variant Information
Position: Chr01:20924108..20927293 (- strand)
Length: 3186
Functional Information:
Description: Similar to ATP-and Zn(2+)-dependent metalloprotease 2. [K7SE25, Glycine max]
GO: Biological Process: proteolysis (GO:0006508)
Cellular Component: membrane (GO:0016020)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: metalloendopeptidase activity (GO:0004222)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: nucleoside-triphosphatase activity (GO:0017111)
InterPro: Peptidase M41 (IPR000642)
AAA+ ATPase domain (IPR003593)
ATPase, AAA-type, core (IPR003959)
ATPase, AAA-type, conserved site (IPR003960)
Peptidase, FtsH (IPR005936)
Peptidase M41, FtsH extracellular (IPR011546)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.11,3.72,91.36,785.31,2.15,38.32,3.03,157.39
Arabidopsis thaliana homolog: AT1G06430.1, AT1G50250.1, AT2G30950.1, AT5G15250.2, AT5G42270.1
Automatic updates:
Name: NM_001289363 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ATP-dependent zinc metalloprotease FTSH 2, chloroplastic-like (LOC100816354), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:20924108..20924454 (- strand)
Length: 347
Type: three_prime_UTR
Position: Chr01:20924455..20924793 (- strand)
Length: 339
Type: CDS
Position: Chr01:20924941..20925181 (- strand)
Length: 241
Type: CDS
Position: Chr01:20925402..20925715 (- strand)
Length: 314
Type: CDS
Position: Chr01:20925788..20926978 (- strand)
Length: 1191
Type: CDS
Position: Chr01:20926979..20927293 (- strand)
Length: 315
Type: five_prime_UTR


>Vigan.01G177500.01
TTTTTTTTTT TAATTTTTTT TGTGTGATTT TTTTCTCTAC TATCTTAAAG CTTACTTGGT TGTTCATATA TTTAATTTTG
TGTTAATTGC CTTCAACTTT GTGAATTCCT TTTAAAGGCT CATTTTTTTT ATATCTTTCC GTCAATTGAA CTGGGATTTG
CTACTTTGAT GCTTTTTTTC ATTCAAGAAA TTTGCGAACT TTAGAGTGTG GTTTGTTTGT TGGTTCATGT AATAAGAAAT
GAGAAGTTTT TTTTACAATG ATAATGATAG TATTTAAGAG CCCTTGTTTT GGGTTGGATG CTGTTGTTGA TATAGATGGC
GGCATCATCT GCATGCCTTG TTGGGAATGG TTTATCTACA AGGGGTAATA GAATAGCTCT TAACAAGGAC TTCAATGGAA
GATATCTCTA CTCATCTTGG AGACTTTCAT CGTTGAACAA TAACAAGGCG TCGAAAGTAT TTTCCATAAG GGCATCCTTG
GAGGAAAGGC AACAAGAAGG GAGAAGGGGG TTTCTGAAAT TATTGCTTGG AAATGCGGGA ATTGGTTTGC CTGCACTGTT
GGGAAGTGGC AAAGCTTATG CTGATGAACA AGGGGCTTCC TCCTCCAGAA TGTCTTACTC CAGGTTTCTA GAGTATTTGG
ACAAGGATAG AGTAAAAAAA GTGGATCTGT ATGACAACGG AACCATTGCT GTTGTTGAGG CTGTTTCTCC TGAATTGGGG
AATAGGGTGC AGCGTGTTAA AGTTCAACTC CCTGGACTTA ACCAGGAGCT CCTTCAGAAA TTCAGGGAAA AGAATATTGA
CTTTGCAGCT CATAGTGCCC AAGAAGAGTC AGGTTCTCTT TTGGCTAACC TGATTGGGAA TCTGGCCTTC CCTTTGATCT
TGATTGGAGG CTTGTTCCTT CTCTCGAGAC GTTCAGGAGG AATGGGAGGT CCTGGTGGAC CAGGATTTCC TCTTGCTTTT
GGCCAATCTA AAGCCAAGTT TCAAATGGAA CCAAACACTG GAGTGACATT TGATGATGTT GCTGGGGTGG ATGAAGCCAA
GCAGGACTTT ATGGAGGTGG TGGAGTTTCT GAAGAAGCCT GAGAGGTTCA CTGCTGTTGG GGCTCGCATA CCTAAAGGAG
TTCTTCTTGT TGGTCCTCCA GGAACTGGGA AGACCCTGTT GGCCAAGGCT ATTGCTGGTG AAGCTGGTGT TCCATTTTTT
TCAATATCCG GTTCTGAGTT TGTTGAGATG TTTGTTGGTG TTGGTGCTTC TCGAGTTCGT GATTTGTTCA AGAAGGCCAA
AGAAAACGCC CCTTGCATTG TCTTTGTTGA TGAAATTGAT GCTGTTGGAA GACAAAGAGG AACTGGAATT GGTGGAGGAA
ATGATGAAAG AGAGCAGACC CTCAACCAAC TTTTGACAGA AATGGATGGT TTTGAGGGTA ATACTGGCAT CATTGTCATT
GCAGCAACTA ACAGGGCAGA CATTCTTGAC TCTGCCTTAT TGAGACCAGG ACGGTTTGAT AGACAGGTTA CTGTTGATGT
TCCAGATATA AGGGGTAGGA CCGAAATCCT AAAGGTTCAT GGTAGCAATA AAAAGTTTAA TGATGATGTT TCTCTTGATG
TGATTGCCAT GAGAACGCCT GGTTTTAGTG GAGCTGATCT TGCAAATCTC TTGAATGAGG CTGCCATATT AGCCGGTCGA
CGTGGAAAGA CAGCAATTTC CTCTAAAGAG ATTGATGATT CCATTGATAG GATTGTGGCT GGAATGGAAG GAACAGTGAT
GACAGATGGG AAGAGCAAAA GTTTAGTGGC ATATCACGAA GTTGGTCATG CTATTTGTGG AACTTTAACT CCTGGTCATG
ATGCTGTGCA AAAGGTAACA CTAGTTCCTC GTGGTCAAGC TCGGGGTCTT ACATGGTTCA TTCCTTCCGA CGACCCAACT
CTTATCTCTA AACAACAACT CTTCGCAAGA ATTGTTGGAG GACTTGGTGG TAGGGCTGCA GAAGAAATTA TTTTTGGTGA
GCCTGAGGTT ACAACTGGAG CAGCTGGTGA TTTGCAGCAA ATCACCGGTT TGGCAAAACA GATGGTAACT ACATTTGGAA
TGTCTGATAT TGGGCCTTGG TCATTGATGG AACCATCAGC ACAAAGTGGG GATGTTATCA TGAGAATGAT GGCAAGGAAC
TCAATGTCAG AGAAGCTTGC AGAAGACATC GATGCTGCCA TCAAGAGGAT CTCAGATGAA GCGTATGAAA TTGCCTTGGA
ACATATAAGG AACAACCGTG AGGCAATAGA CAAGATTGTG GATGTCCTTC TGGAGAAGGA GACATTGTCT GGTGATGAAT
TCCGTGCTCT ACTGTCTGAA TTTACTGAAA TTCCAGCTGA AAACCGTGTC CCTCCAACTC CAGTACCAGC CACTGTTTAA
ATACCTTATA TGAAACATCG TTAATATGTA CTATCTTTTA GAATACGAAA TTCCCTCTAC AGCCTGCTCC ATATTTGTGA
ATGATTAAAG ATTCTACCTT TTTCATTTTC CTAGTGTTTA TAAATGACAA TAGAGAGTAT ATATTCATAT ATATGGAAGA
GAAAATGATA AGTGTAAAAT AAATGGTCTA TACGTCTATA ATACAGTGTA ACTTTTGTTA ACAGAGTTGT AACTGCAATG
TTTTAAGGCC AAATGCTAAG TCACTGTTTT GTCAGTTAGG TTCATAAATT TTCTTTCACC ATTAGATTAG ACTTTTGCAT
TCATAGCAAT AACAAACAAG AAAGCAC

>Vigan.01G177500.01
ATGGCGGCAT CATCTGCATG CCTTGTTGGG AATGGTTTAT CTACAAGGGG TAATAGAATA GCTCTTAACA AGGACTTCAA
TGGAAGATAT CTCTACTCAT CTTGGAGACT TTCATCGTTG AACAATAACA AGGCGTCGAA AGTATTTTCC ATAAGGGCAT
CCTTGGAGGA AAGGCAACAA GAAGGGAGAA GGGGGTTTCT GAAATTATTG CTTGGAAATG CGGGAATTGG TTTGCCTGCA
CTGTTGGGAA GTGGCAAAGC TTATGCTGAT GAACAAGGGG CTTCCTCCTC CAGAATGTCT TACTCCAGGT TTCTAGAGTA
TTTGGACAAG GATAGAGTAA AAAAAGTGGA TCTGTATGAC AACGGAACCA TTGCTGTTGT TGAGGCTGTT TCTCCTGAAT
TGGGGAATAG GGTGCAGCGT GTTAAAGTTC AACTCCCTGG ACTTAACCAG GAGCTCCTTC AGAAATTCAG GGAAAAGAAT
ATTGACTTTG CAGCTCATAG TGCCCAAGAA GAGTCAGGTT CTCTTTTGGC TAACCTGATT GGGAATCTGG CCTTCCCTTT
GATCTTGATT GGAGGCTTGT TCCTTCTCTC GAGACGTTCA GGAGGAATGG GAGGTCCTGG TGGACCAGGA TTTCCTCTTG
CTTTTGGCCA ATCTAAAGCC AAGTTTCAAA TGGAACCAAA CACTGGAGTG ACATTTGATG ATGTTGCTGG GGTGGATGAA
GCCAAGCAGG ACTTTATGGA GGTGGTGGAG TTTCTGAAGA AGCCTGAGAG GTTCACTGCT GTTGGGGCTC GCATACCTAA
AGGAGTTCTT CTTGTTGGTC CTCCAGGAAC TGGGAAGACC CTGTTGGCCA AGGCTATTGC TGGTGAAGCT GGTGTTCCAT
TTTTTTCAAT ATCCGGTTCT GAGTTTGTTG AGATGTTTGT TGGTGTTGGT GCTTCTCGAG TTCGTGATTT GTTCAAGAAG
GCCAAAGAAA ACGCCCCTTG CATTGTCTTT GTTGATGAAA TTGATGCTGT TGGAAGACAA AGAGGAACTG GAATTGGTGG
AGGAAATGAT GAAAGAGAGC AGACCCTCAA CCAACTTTTG ACAGAAATGG ATGGTTTTGA GGGTAATACT GGCATCATTG
TCATTGCAGC AACTAACAGG GCAGACATTC TTGACTCTGC CTTATTGAGA CCAGGACGGT TTGATAGACA GGTTACTGTT
GATGTTCCAG ATATAAGGGG TAGGACCGAA ATCCTAAAGG TTCATGGTAG CAATAAAAAG TTTAATGATG ATGTTTCTCT
TGATGTGATT GCCATGAGAA CGCCTGGTTT TAGTGGAGCT GATCTTGCAA ATCTCTTGAA TGAGGCTGCC ATATTAGCCG
GTCGACGTGG AAAGACAGCA ATTTCCTCTA AAGAGATTGA TGATTCCATT GATAGGATTG TGGCTGGAAT GGAAGGAACA
GTGATGACAG ATGGGAAGAG CAAAAGTTTA GTGGCATATC ACGAAGTTGG TCATGCTATT TGTGGAACTT TAACTCCTGG
TCATGATGCT GTGCAAAAGG TAACACTAGT TCCTCGTGGT CAAGCTCGGG GTCTTACATG GTTCATTCCT TCCGACGACC
CAACTCTTAT CTCTAAACAA CAACTCTTCG CAAGAATTGT TGGAGGACTT GGTGGTAGGG CTGCAGAAGA AATTATTTTT
GGTGAGCCTG AGGTTACAAC TGGAGCAGCT GGTGATTTGC AGCAAATCAC CGGTTTGGCA AAACAGATGG TAACTACATT
TGGAATGTCT GATATTGGGC CTTGGTCATT GATGGAACCA TCAGCACAAA GTGGGGATGT TATCATGAGA ATGATGGCAA
GGAACTCAAT GTCAGAGAAG CTTGCAGAAG ACATCGATGC TGCCATCAAG AGGATCTCAG ATGAAGCGTA TGAAATTGCC
TTGGAACATA TAAGGAACAA CCGTGAGGCA ATAGACAAGA TTGTGGATGT CCTTCTGGAG AAGGAGACAT TGTCTGGTGA
TGAATTCCGT GCTCTACTGT CTGAATTTAC TGAAATTCCA GCTGAAAACC GTGTCCCTCC AACTCCAGTA CCAGCCACTG
TTTAA

>Vigan.01G177500.01
MAASSACLVG NGLSTRGNRI ALNKDFNGRY LYSSWRLSSL NNNKASKVFS IRASLEERQQ EGRRGFLKLL LGNAGIGLPA
LLGSGKAYAD EQGASSSRMS YSRFLEYLDK DRVKKVDLYD NGTIAVVEAV SPELGNRVQR VKVQLPGLNQ ELLQKFREKN
IDFAAHSAQE ESGSLLANLI GNLAFPLILI GGLFLLSRRS GGMGGPGGPG FPLAFGQSKA KFQMEPNTGV TFDDVAGVDE
AKQDFMEVVE FLKKPERFTA VGARIPKGVL LVGPPGTGKT LLAKAIAGEA GVPFFSISGS EFVEMFVGVG ASRVRDLFKK
AKENAPCIVF VDEIDAVGRQ RGTGIGGGND EREQTLNQLL TEMDGFEGNT GIIVIAATNR ADILDSALLR PGRFDRQVTV
DVPDIRGRTE ILKVHGSNKK FNDDVSLDVI AMRTPGFSGA DLANLLNEAA ILAGRRGKTA ISSKEIDDSI DRIVAGMEGT
VMTDGKSKSL VAYHEVGHAI CGTLTPGHDA VQKVTLVPRG QARGLTWFIP SDDPTLISKQ QLFARIVGGL GGRAAEEIIF
GEPEVTTGAA GDLQQITGLA KQMVTTFGMS DIGPWSLMEP SAQSGDVIMR MMARNSMSEK LAEDIDAAIK RISDEAYEIA
LEHIRNNREA IDKIVDVLLE KETLSGDEFR ALLSEFTEIP AENRVPPTPV PATV*