GBrowse Details

Vigan.01G179200.01

Basic Information:
Name: Vigan.01G179200.01
Multiple alignment
Variant Information
Position: Chr01:21262800..21267660 (+ strand)
Length: 4861
Functional Information:
Description: Similar to multiple RNA-binding domain-containing protein 1-like. [XP_004490616.1, Cicer arietinum]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:50.46,19.31,17.98,25.14,30.42,16.26,12.54,12.34
Arabidopsis thaliana homolog: AT4G20030.1
Automatic updates:
Name: NM_001248757 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305971 (LOC100305971), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:21262800..21262894 (+ strand)
Length: 95
Type: five_prime_UTR
Position: Chr01:21262895..21263030 (+ strand)
Length: 136
Type: CDS
Position: Chr01:21266604..21266672 (+ strand)
Length: 69
Type: CDS
Position: Chr01:21266785..21266891 (+ strand)
Length: 107
Type: CDS
Position: Chr01:21267278..21267412 (+ strand)
Length: 135
Type: CDS
Position: Chr01:21267413..21267660 (+ strand)
Length: 248
Type: three_prime_UTR


>Vigan.01G179200.01
AAATATACGA AATTTAAAAT TATGAAATCA AATTAGTTTA GAACAACCTC GTTCGCTGTG CTCATAAGAA TCAAAGGCCG
TATTTGGTTT TGGTGATGGA GATGAGTATG TTGGCTCCTT CCTTCCCTGG CTTCGCTAAA CCCTCTGCAA CTGTAAAACC
TTCTCTTCTT ACGCTCAGGG CATCTTCTCT GCGCCATGAC TACCCTCTTG CGAGCAAAAT TGTTGTTAAG AATTTACCCT
ATTCTACTGG TGAGATTACT TTGCAAAAGG AATTTTCTAA TTTTGGAAAG ATAGCTGAAG TTAAAATGGT TAAAGATATG
AAAACGAAAA GATCCAAGGG TATTGCTTTC ATTCAATATA CATGCCAAGA TGATGCCATG CTTGCACTAG AAACCATGGA
TCAGAAGGAT TTTTATGGTC GAACAATCTA TGTGGAAATT GCTAGATTGG GTTGGGATTG TTTTGGTGCA ACCCCAAGGG
CCTCAGGACC CCCAAAGAAG TGGAATTTGC CAGAGCAAGA AGTGGTAGAT TGTTGGTACT GATCAAAATT CATAATTGAG
GGAAGCTGTA GAACAGAAAA TGATGAAGTA ACAAATATCA ATTTATAAAA ATATGGCTAT ACAAGTTAGG GTTTGATGGA
ACATGTTTTT GTAATAATAT TGATGCAATA CTGTACTTGA TGTAATCTTT CATGCACTCT TGATTTTGGC ACAATAAAAT
TAACTTGATC TATCTGTAGG GCTCCAACAG TTATAAATTT TATTACAAAG ATTTAGGTGA TTTTCATTCA 

>Vigan.01G179200.01
ATGGAGATGA GTATGTTGGC TCCTTCCTTC CCTGGCTTCG CTAAACCCTC TGCAACTGTA AAACCTTCTC TTCTTACGCT
CAGGGCATCT TCTCTGCGCC ATGACTACCC TCTTGCGAGC AAAATTGTTG TTAAGAATTT ACCCTATTCT ACTGGTGAGA
TTACTTTGCA AAAGGAATTT TCTAATTTTG GAAAGATAGC TGAAGTTAAA ATGGTTAAAG ATATGAAAAC GAAAAGATCC
AAGGGTATTG CTTTCATTCA ATATACATGC CAAGATGATG CCATGCTTGC ACTAGAAACC ATGGATCAGA AGGATTTTTA
TGGTCGAACA ATCTATGTGG AAATTGCTAG ATTGGGTTGG GATTGTTTTG GTGCAACCCC AAGGGCCTCA GGACCCCCAA
AGAAGTGGAA TTTGCCAGAG CAAGAAGTGG TAGATTGTTG GTACTGA

>Vigan.01G179200.01
MEMSMLAPSF PGFAKPSATV KPSLLTLRAS SLRHDYPLAS KIVVKNLPYS TGEITLQKEF SNFGKIAEVK MVKDMKTKRS
KGIAFIQYTC QDDAMLALET MDQKDFYGRT IYVEIARLGW DCFGATPRAS GPPKKWNLPE QEVVDCWY*