GBrowse Details

Vigan.01G182100.01

Basic Information:
Name: Vigan.01G182100.01
Multiple alignment
Variant Information
Position: Chr01:21666036..21669215 (+ strand)
Length: 3180
Functional Information:
Description: Similar to Peptidyl-prolyl cis-trans isomerase. [V7CNA6, Phaseolus vulgaris]
GO: Biological Process: protein folding (GO:0006457)
InterPro: Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain (IPR001179)
Peptidyl-prolyl cis-trans isomerase, FKBP-type (IPR023566)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.85,7.24,12.59,64.22,4.21,10.61,3.27,9.49
Arabidopsis thaliana homolog: AT5G45680.1
Automatic updates:
Name: NM_001254116 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max FKBP-type peptidyl-prolyl cis-trans isomerase 3, chloroplastic-like (LOC100778390), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:21666036..21666073 (+ strand)
Length: 38
Type: five_prime_UTR
Position: Chr01:21666074..21666448 (+ strand)
Length: 375
Type: CDS
Position: Chr01:21667334..21667426 (+ strand)
Length: 93
Type: CDS
Position: Chr01:21667790..21667850 (+ strand)
Length: 61
Type: CDS
Position: Chr01:21667926..21667994 (+ strand)
Length: 69
Type: CDS
Position: Chr01:21668831..21668895 (+ strand)
Length: 65
Type: CDS
Position: Chr01:21668896..21669215 (+ strand)
Length: 320
Type: three_prime_UTR


>Vigan.01G182100.01
AACAATTTGA ACTAGAACCA TTCGTTTATC GGGTGGAGAT GGGTTTAGCG GCACCTTATT CCGTTGGAAC AAGCCTCCCT
TCCCTTCAAC GCCTTCCTTC CCCGAAACCC CAAATCTGTA ACAATTATTC ATCTCCTGTT AGTTCCCACC GTCATGTGAA
ATGTGCTTTC CAACTTCAAC CACAAACACC ACCACCGACA ACAACTGTAA CAGTGGCACC GGACGAGAGC CTCGTGAAGA
GAAGAACTGT CATAGGCCTT TTTGCATTTG ATGCTGTCCT TGCTTATTCT TCCTTAAATT CATCACCAGC AGCTGAAACT
CCATGTGAAT TTCAAGTGGC ACCTTCTGGT CTTGCCTTCT GTGATAAACT TGTGGGAGCA GGTCCTCAGG CAGTCAAGGG
ACAACTTATT AAGGCGCATT ATGTGGGGAG ATTGGAGAAT GGGAAAGTTT TTGACAGCAG CTATAATCGT GGCAAGCCAC
TAACGTTTCG CGTTGGTGTT GGAGAGGTGA TTAAAGGTTG GGATGAAGGC ATTATTGGAG GTGATGGAGT TCCTCCCATG
CTTGCAGGAG GGAAACGTAC CCTGAAGATT CCTCCAGAAC TTGGATATGG TTCAAGAGGA GCTGGTTGTC GAGGAGGTTC
ATGCATCATT CCTCCTGATT CAGTGCTATT GTTTGATGTG GAGTTCGTTA GCCAAGCATG ATTTACAAAG CCATGAGCGG
GAAAGTTTCC TTCTTTTCCT TTGGAGTTTA GAGCATAGAT TACATATAGT TGAAATTCTA AAATTAAATG TTAAAGTTGA
ACTTGCTGGA GAAATTCATA ACTAAGTCAT TAACATGCTA TTTTATTGAT TATCCAGCCT TGATTTCATT AGCATAGAAA
TTGTACCCGA AAGTTGAACA GTTATGAGCA GTAATGGAAA AAACACTCCT CTGAAGTTCA AACTAAGAGG GTGAATAACA
CAGAAGAAAA ATGGAAATAA CCAAATAAAG GAAACAATCA GTAAAAGGAA AGCTGTCAAA G

>Vigan.01G182100.01
ATGGGTTTAG CGGCACCTTA TTCCGTTGGA ACAAGCCTCC CTTCCCTTCA ACGCCTTCCT TCCCCGAAAC CCCAAATCTG
TAACAATTAT TCATCTCCTG TTAGTTCCCA CCGTCATGTG AAATGTGCTT TCCAACTTCA ACCACAAACA CCACCACCGA
CAACAACTGT AACAGTGGCA CCGGACGAGA GCCTCGTGAA GAGAAGAACT GTCATAGGCC TTTTTGCATT TGATGCTGTC
CTTGCTTATT CTTCCTTAAA TTCATCACCA GCAGCTGAAA CTCCATGTGA ATTTCAAGTG GCACCTTCTG GTCTTGCCTT
CTGTGATAAA CTTGTGGGAG CAGGTCCTCA GGCAGTCAAG GGACAACTTA TTAAGGCGCA TTATGTGGGG AGATTGGAGA
ATGGGAAAGT TTTTGACAGC AGCTATAATC GTGGCAAGCC ACTAACGTTT CGCGTTGGTG TTGGAGAGGT GATTAAAGGT
TGGGATGAAG GCATTATTGG AGGTGATGGA GTTCCTCCCA TGCTTGCAGG AGGGAAACGT ACCCTGAAGA TTCCTCCAGA
ACTTGGATAT GGTTCAAGAG GAGCTGGTTG TCGAGGAGGT TCATGCATCA TTCCTCCTGA TTCAGTGCTA TTGTTTGATG
TGGAGTTCGT TAGCCAAGCA TGA

>Vigan.01G182100.01
MGLAAPYSVG TSLPSLQRLP SPKPQICNNY SSPVSSHRHV KCAFQLQPQT PPPTTTVTVA PDESLVKRRT VIGLFAFDAV
LAYSSLNSSP AAETPCEFQV APSGLAFCDK LVGAGPQAVK GQLIKAHYVG RLENGKVFDS SYNRGKPLTF RVGVGEVIKG
WDEGIIGGDG VPPMLAGGKR TLKIPPELGY GSRGAGCRGG SCIIPPDSVL LFDVEFVSQA *