GBrowse Details

Vigan.01G184100.01

Basic Information:
Name: Vigan.01G184100.01
Multiple alignment
Variant Information
Position: Chr01:21981018..21983595 (- strand)
Length: 2578
Functional Information:
Description: Similar to Uncharacterized protein. [I1KRN4, Glycine max]
GO: Biological Process: glutamate metabolic process (GO:0006536)
Biological Process: carboxylic acid metabolic process (GO:0019752)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: glutamate decarboxylase activity (GO:0004351)
Molecular Function: carboxy-lyase activity (GO:0016831)
Molecular Function: pyridoxal phosphate binding (GO:0030170)
InterPro: Pyridoxal phosphate-dependent decarboxylase (IPR002129)
Glutamate decarboxylase (IPR010107)
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (IPR015421)
Pyridoxal phosphate-dependent transferase (IPR015424)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.08,0.96,0.11,0.54,0.18,0.58,0.10
Arabidopsis thaliana homolog: AT1G65960.2, AT2G02000.1, AT2G02010.1, AT3G17760.1, AT5G17330.1
Automatic updates:
Name: NM_001254232 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glutamate decarboxylase 1-like (LOC100812201), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:21981018..21981120 (- strand)
Length: 103
Type: three_prime_UTR
Position: Chr01:21981121..21981588 (- strand)
Length: 468
Type: CDS
Position: Chr01:21982012..21982064 (- strand)
Length: 53
Type: CDS
Position: Chr01:21982155..21982408 (- strand)
Length: 254
Type: CDS
Position: Chr01:21982487..21982902 (- strand)
Length: 416
Type: CDS
Position: Chr01:21983038..21983242 (- strand)
Length: 205
Type: CDS
Position: Chr01:21983330..21983415 (- strand)
Length: 86
Type: CDS
Position: Chr01:21983416..21983595 (- strand)
Length: 180
Type: five_prime_UTR


>Vigan.01G184100.01
GTGAAGCCAA GGAACGATTC TCCCTTTCTA AGTTCTCACC TATCTACCAT TAATTTCCTA AGTATATATA CCACTGCTTG
TCTCTTCAAC CTCTTCATCC AACATCTAAA CTAAACATAA CTTTCTCTCT TTTTTGTCTC TCACAACACC AACATAACAT
ATTATACCAC ACACCTCACC ATGGTTTTTC CAAAACCTTC TTCTGAATCT GACCTCTTTC TTCATTCCAA CTTTGCCTCT
TGTTATGGTG GAGACTCTCT TCCCAGGTTC ACCATGCCTC AGAACTCCAT GCCTAAAGAG GCAGCGTACC AGAACATACA
TGACGAGTTA CAGCTTGATG CTATTCCCAA GCTTAACTTG GCTTCCTTTG TCACCACTTC CATGGAGGAG GAGTGCAACA
AGCTCATCAT GGAATCTATC AACAAGAACT ATGTAGACAT GGACGAGTAT CCTGCCACCA CTGACCTTCA TAACCGGTGT
GTGAATATGA TAGCACGTTT GTTCCATGCT GAAATCGGAG AAGATGAGAA TGCTATTGGA GCAGGAACTG TTGGGTCATC
AGAAGCAATA ATGCTGGCAG GACTTGCATT CAAGAAGAAG TGGCAGAACA AACGTAAGGC AGAAGGCAAA CCTTATGATA
AGCCTAATTT GGTCACTGGC TCCAATGTAC AAGTATGTTG GGAGAAATTT GCCAGGTATT TTGAGGTGGA GTTGAGGGAA
GTGGAAGTGA GAGAAGGATA CTACGTTATG GATCCTGCCA AAGCAGTCCA GCTGGTTGAC GAAAATACTA TTTGTGTGGC
TGCAATATTG GGTTCAACGT ACAATGGAGA GTTTGAAGAC GTGAAGCTCT TGAATGACTT GCTGCTACAA AAGAATAAGC
AAACTGGATG GGAAACTCCT ATTCATGTGG ATGCTGCAAG TGGTGGTTTC ATTGCTCCAT TCCTATATCC AGAGCTGGAG
TGGGATTTCA GGCTGCCATT GGTGAAGAGC ATAAACGTGA GTGGACACAA ATATGGGCTT GTTTATGCTG GTATTGGTTG
GGTTATTTGG AGGACAAAGG ATGACTTACC AGAAGACCTT GTGTTCCATA TCAATTACCT TGGAGCTGAC CAACCCACTT
TCACCCTCAA TTTCTCCAAA GGTTCTAGTC AGATCATTGC TCAATATTAT CAGCTAGTTC GCCTTGGTCA AGAGGGTTAC
CGGAGCATAA TGGAGAACTG CAGAGAAAAC GCAATGGTGG TGAAGGAACA TTTAGAGAAG AGTGGACGCT TTAACATACT
CTCAAAAGAC GATGGTGTTC CAGTGGTGGC ATTTTCTCTG AAAGACAGAA GTCAGTACGA TGAGTACAAG ATATCAGAGA
TGCTGCGGCG CCACGGTTGG ATCGTACCAG CTTATCCAAT GCCACCTGCT GCTCAGCACA TCAATGTGCT CCGTGTGGTG
ATCAGGGCTG AGTTTTCACG TACCCTTGCT CAACGCCTTG TATTTGACAT CAACAATGTG CTGCATGAAC TTGAAAAACT
ACATCTTCCC AAAGTGATCA ACAACATTAC GGAAGAGAAG AAGGAGTTGG TTGAAAGTGC GGTTAAGAAA ACAGCATTGG
ATGCACATAG GGAAATCATT GCTCAAGAAT CGCACAAGCG TCAGAAAATC ATGGCTGCGT AGCTAGGGAA TTCTGGCTCA
CCATGCCAAT TAAATAAGAA GCCTTCACTA TATTTTTTCT AACTATAGTT GCTTTATTCA TTTTTGAAAA TTATGTCATT
TCAAC

>Vigan.01G184100.01
ATGGTTTTTC CAAAACCTTC TTCTGAATCT GACCTCTTTC TTCATTCCAA CTTTGCCTCT TGTTATGGTG GAGACTCTCT
TCCCAGGTTC ACCATGCCTC AGAACTCCAT GCCTAAAGAG GCAGCGTACC AGAACATACA TGACGAGTTA CAGCTTGATG
CTATTCCCAA GCTTAACTTG GCTTCCTTTG TCACCACTTC CATGGAGGAG GAGTGCAACA AGCTCATCAT GGAATCTATC
AACAAGAACT ATGTAGACAT GGACGAGTAT CCTGCCACCA CTGACCTTCA TAACCGGTGT GTGAATATGA TAGCACGTTT
GTTCCATGCT GAAATCGGAG AAGATGAGAA TGCTATTGGA GCAGGAACTG TTGGGTCATC AGAAGCAATA ATGCTGGCAG
GACTTGCATT CAAGAAGAAG TGGCAGAACA AACGTAAGGC AGAAGGCAAA CCTTATGATA AGCCTAATTT GGTCACTGGC
TCCAATGTAC AAGTATGTTG GGAGAAATTT GCCAGGTATT TTGAGGTGGA GTTGAGGGAA GTGGAAGTGA GAGAAGGATA
CTACGTTATG GATCCTGCCA AAGCAGTCCA GCTGGTTGAC GAAAATACTA TTTGTGTGGC TGCAATATTG GGTTCAACGT
ACAATGGAGA GTTTGAAGAC GTGAAGCTCT TGAATGACTT GCTGCTACAA AAGAATAAGC AAACTGGATG GGAAACTCCT
ATTCATGTGG ATGCTGCAAG TGGTGGTTTC ATTGCTCCAT TCCTATATCC AGAGCTGGAG TGGGATTTCA GGCTGCCATT
GGTGAAGAGC ATAAACGTGA GTGGACACAA ATATGGGCTT GTTTATGCTG GTATTGGTTG GGTTATTTGG AGGACAAAGG
ATGACTTACC AGAAGACCTT GTGTTCCATA TCAATTACCT TGGAGCTGAC CAACCCACTT TCACCCTCAA TTTCTCCAAA
GGTTCTAGTC AGATCATTGC TCAATATTAT CAGCTAGTTC GCCTTGGTCA AGAGGGTTAC CGGAGCATAA TGGAGAACTG
CAGAGAAAAC GCAATGGTGG TGAAGGAACA TTTAGAGAAG AGTGGACGCT TTAACATACT CTCAAAAGAC GATGGTGTTC
CAGTGGTGGC ATTTTCTCTG AAAGACAGAA GTCAGTACGA TGAGTACAAG ATATCAGAGA TGCTGCGGCG CCACGGTTGG
ATCGTACCAG CTTATCCAAT GCCACCTGCT GCTCAGCACA TCAATGTGCT CCGTGTGGTG ATCAGGGCTG AGTTTTCACG
TACCCTTGCT CAACGCCTTG TATTTGACAT CAACAATGTG CTGCATGAAC TTGAAAAACT ACATCTTCCC AAAGTGATCA
ACAACATTAC GGAAGAGAAG AAGGAGTTGG TTGAAAGTGC GGTTAAGAAA ACAGCATTGG ATGCACATAG GGAAATCATT
GCTCAAGAAT CGCACAAGCG TCAGAAAATC ATGGCTGCGT AG

>Vigan.01G184100.01
MVFPKPSSES DLFLHSNFAS CYGGDSLPRF TMPQNSMPKE AAYQNIHDEL QLDAIPKLNL ASFVTTSMEE ECNKLIMESI
NKNYVDMDEY PATTDLHNRC VNMIARLFHA EIGEDENAIG AGTVGSSEAI MLAGLAFKKK WQNKRKAEGK PYDKPNLVTG
SNVQVCWEKF ARYFEVELRE VEVREGYYVM DPAKAVQLVD ENTICVAAIL GSTYNGEFED VKLLNDLLLQ KNKQTGWETP
IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RTKDDLPEDL VFHINYLGAD QPTFTLNFSK
GSSQIIAQYY QLVRLGQEGY RSIMENCREN AMVVKEHLEK SGRFNILSKD DGVPVVAFSL KDRSQYDEYK ISEMLRRHGW
IVPAYPMPPA AQHINVLRVV IRAEFSRTLA QRLVFDINNV LHELEKLHLP KVINNITEEK KELVESAVKK TALDAHREII
AQESHKRQKI MAA*