GBrowse Details

Vigan.01G185700.01

Basic Information:
Name: Vigan.01G185700.01
Multiple alignment
Variant Information
Position: Chr01:22274492..22302365 (+ strand)
Length: 27874
Functional Information:
Description: Similar to sodium/hydrogen exchanger 7-like isoform X2. [XP_004504612.1, Cicer arietinum]
GO: Biological Process: cation transport (GO:0006812)
Biological Process: transmembrane transport (GO:0055085)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: solute:hydrogen antiporter activity (GO:0015299)
InterPro: Cyclic nucleotide-binding domain (IPR000595)
Cation/H+ exchanger (IPR006153)
RmlC-like jelly roll fold (IPR014710)
Na+/H+ exchanger, isoforms 7/8 (IPR018418)
Cation/H+ exchanger, CPA1 family (IPR018422)
Cyclic nucleotide-binding-like (IPR018490)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.28,1.70,6.00,1.53,2.78,1.84,21.33,4.67
Arabidopsis thaliana homolog: AT1G14660.1, AT2G01980.1
Automatic updates:
Name: NM_001258010 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max Na+/H+ antiporter (SOS1), mRNA.
PubMed ID: 24934653 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:22274492..22274794 (+ strand)
Length: 303
Type: five_prime_UTR
Position: Chr01:22274795..22275032 (+ strand)
Length: 238
Type: CDS
Position: Chr01:22276214..22276264 (+ strand)
Length: 51
Type: CDS
Position: Chr01:22276458..22276549 (+ strand)
Length: 92
Type: CDS
Position: Chr01:22276949..22277026 (+ strand)
Length: 78
Type: CDS
Position: Chr01:22277097..22277254 (+ strand)
Length: 158
Type: CDS
Position: Chr01:22277419..22277520 (+ strand)
Length: 102
Type: CDS
Position: Chr01:22277597..22277714 (+ strand)
Length: 118
Type: CDS
Position: Chr01:22277828..22277880 (+ strand)
Length: 53
Type: CDS
Position: Chr01:22277952..22278017 (+ strand)
Length: 66
Type: CDS
Position: Chr01:22280195..22280239 (+ strand)
Length: 45
Type: CDS
Position: Chr01:22280414..22280466 (+ strand)
Length: 53
Type: CDS
Position: Chr01:22280790..22280974 (+ strand)
Length: 185
Type: CDS
Position: Chr01:22287815..22287862 (+ strand)
Length: 48
Type: CDS
Position: Chr01:22288009..22288116 (+ strand)
Length: 108
Type: CDS
Position: Chr01:22288717..22288948 (+ strand)
Length: 232
Type: CDS
Position: Chr01:22290150..22290452 (+ strand)
Length: 303
Type: CDS
Position: Chr01:22292080..22292177 (+ strand)
Length: 98
Type: CDS
Position: Chr01:22292375..22292506 (+ strand)
Length: 132
Type: CDS
Position: Chr01:22292592..22292801 (+ strand)
Length: 210
Type: CDS
Position: Chr01:22292886..22293092 (+ strand)
Length: 207
Type: CDS
Position: Chr01:22293426..22293693 (+ strand)
Length: 268
Type: CDS
Position: Chr01:22301297..22301601 (+ strand)
Length: 305
Type: CDS
Position: Chr01:22301834..22302115 (+ strand)
Length: 282
Type: CDS
Position: Chr01:22302116..22302365 (+ strand)
Length: 250
Type: three_prime_UTR


>Vigan.01G185700.01
GTGAAATCTT CTTCTCTAAG GAACAATATC AGTAGTACAA TTTTTCTCTA ACTTCATGTT TTTTTCAGAA GGATTTGATT
GTGCTGAGGT AGTCATTAGT CAACAAACTA TAATCTCCGC CACATTGTTT TGTCGTGTAG AACATCATCA CTCTTCATTC
AGCGGCTAGA TTTCACAGGA AAAAAAACAA AATGCAACCT TCTCTCTCTT TTGCACGTGT CTCTGTTTCT GGTTGATCCA
AATTCAGGAA CCTGATAATA GGGACTTCCC AGTTCTCATC TCTCATCATC ACCACTGCCG CAAATGGAGC TACTACACCA
AGAGCAACAA CCCGTTTCGC TTTCCCTTTC CTTTTCCCTT TCTGTTGTCT CTGATGCTTC TGCTCCTTCC TCTTCATCGG
AACAGTCCAG TCCAGCAGAT GCAGTAATCT TCTTTGGTCT CAGTTTGGCT CTGGGGATTG CTTGTAGGCA CCTCTTGCGT
GGGACTAGAG TTCCTTACAC CGTTGCCTTG CTCATAATTG GCATTGCACT TGGATCTATA GAATATGGTA CTCATCATCG
GCTGGGAAAG ATTGGAGATG GAATTCGTCT TTGGTCAGAG ATTGATCCAG ACCTTCTGTT AGCTGTTTTT CTTCCTGCTC
TCCTGTTTGA AAGCTCATTC TTAATGGAAG TTCACCAAAT TAAGAGGTGT CTTGCACAAA TGATCATACT AGCTGGTCCT
GGTGTTGCGC TTTCAACTGT TTGTCTTGGA GTTGTCATGA AGCTTACTTT TCCATACAAC TGGGGTTGGA AAACATCACT
GTTGCTTGGG GGACTTCTGA GTGCAACAGA TCCTGTTGCT GTTGTGGCTT TGTTGAAAGA TCTTGGTGCC AGCAAAAAAC
TAAGCACCAT AATTGAAGGG GAATCCTTGA TGAATGATGG GACGGCTATT GTAGTTTATA CTCTTTTCTA TCGGATGGTT
CTTGGAGAGA CCTTCAATTG GGCTGCTATA ATCAAATTTC TAGCACAAGT TTCACTTGGA GCTGTAGGGA TGGGTCTTGC
TTTTGGGATT GCATCTGTTT TGTGGCTAGG GTTTATTTTT AATGATACAG TGATTGAAAT TGCTCTAACA TTTGCTGTTA
GCTACATTGC TTATTTCACT GCCCAGGAGG GTTCAGGTGT CTCAGGTGTT TTGACGGTGA TGTCTTTGGG AATGTTTTAT
TCTGCATTTG CAAGGACAGC TTTTAAGGGT GAAAGTCAAC AAAGCTTACA TCACTTTTGG GAAATGATTG CTTATATAGC
TAATACCTTA ATTTTCATTT TGAGTGGAGT TGTCATAGCT GAAGGAATAC TTGGTGACAA CAATGTTTTC TATCATGGAA
CATCATGGAC CCACCTCTTG CTTCTCTATG TTTATGTACA AGTGTCTCGA TGCATTGTTG TTGGAGTATT GTTTCCCTTT
CTTAGATATT TTGGATATGG TTTGGATTGG AAAGAAGCTA TTATTCTCAT CTGGTCAGGA TTGCGAGGGG CAGTTGCCTT
GGCACTTTCA TTATCAGTTA AGCGTTCAAG TGGAAAATCA ATTGAGTTGA CTCCGGAGAC AGGAACACTG TTTGTTTTCT
TCACTGGTGG AACTGTGTTT TTAACACTTA TAGTAAATGG GTCAACCACA CAACTCATGT TACGTTACCT TGGCATGGAT
AGTTTATCAG CAGCTAAGAG ACGTATCCTT GACTTTACAA AGCATGAAAT GTTGGACAAG GCATTGGAGG CTTTCAGTGA
ACTTGGAGAT GATGAGGAAC TTGGGCCTGC TGACTGGCCC ACAGTGAAGA GATACATCTC TTGCTTAAAT GACATTGAAG
GTGAACGTGT TCACCCTCAT GGTGCAACTG AAAATGATAG TCAACTAGAT CCTATGAACT TGAAAGATAT ACGAGTACGA
CTACTGAATG GTGTACAAGC TGCTTACTGG GAGATGCTTG AGGAAGGAAG GATTTCTCAA ATAACAGCTA ATGTCCTAAT
GTTATCCGTA GAGGAAGCCA TAGATTTGGC TTCATCTGAG TCTCTATGCG ACTGGAAAGG TTTAAAATCT AACGTTCACT
TCCCAAGTTA CTACAAGTTT CTACAGTCCA ATATGTTCCC ACCGAAGCTA GTGACATACT TCACTGTACA AAGGTTGGAA
TCTGCATGTT ATATTTGTGC TGCATTTCTT CGTGCTCACA GAATTGCTCG ACAACAATTA CATGACTTCA TAGGTGACAG
CGATATTGCT TCTGCTGTCA TCAATGAAAG TGTTGTAGAA GGAGAAGAAG CACGGAAGTT CCTAGAAGAT GTTAATGTGA
CATACCCTCA GGTTCTGCGT GTAGTAAAAA CAAGGCAAGT TACATATGCA GTGCTACATA ATTTAATTGA ATATGTTCAA
AACCTTGAGA AGACTGGGAT ATTGGAAGAG AAAGAGATGC TACATCTCCA TGATGCTGTC CAGACTGATT TGAAGAAATT
ACTTAGAAAT CCTCCTTTGG TTAAGCTTCC TAAAATAAGT AGCATACATC CTATGTTGGG TGCTCTCCCA TCTTCGGTTC
GTGAATCACT TGCCAACTGT ACCAAGGAAA TGATGAAATT CCGTGGTGTG ACACTTTACA AGGAAGGTGC AAAGTCAAAT
GGTATTTGGT TAATTTGTAA TGGAGTAGTG AAGTGGGAAA GCAAGATGAC ACCAACCAAA CACTCATTTT ATCCTACTTT
TACTCATGGG AGTACATTGG GTCTTTATGA AGTGCTGACT GGAAGACCAT ATATCTGTGA TGTCATCACA GATTCTGTAG
TATTCTGCAT TTTCCTTGAA GCTGGCAAGA TAATATCATG TCTCAAATCA GATCCTTCAA CAGAAAACTT CCTGTGGGAG
GAAAGTGCTA TTTTCCTTTC CAAACTATTG GTTCCTCAGA TATTTGGGAA ACTGGCTATG AAAGATTTAA GAGCTCTTAT
TGCAGATCCA GAGAGATCTA GGATGACCAT ATTCATAAGA GGGGAAACAA TAGAAATCCC TCATCATTCA GTTGCCCTCT
TACTAGAAGG ATATGTAAAA ACTCAAGGTC GTCAAGAACT CATAACAGCA CCAGCAGCGC TGCTTCCTTC ATCCGGGAAT
CTAAGCTTCC AAAATTTGGC AGGATCAGGT TCCAAGGGAG CTAGTTTTAC TCATCAAGGA TCTATTTATC TAGTTGAAAC
TACAGCAAGG GTAATTCTTT TTGACATTCC AGCATCTGAG ACCGATGCTT CTCTTGTGAG AAGGTCAAGT TCAGTGTTAC
TGCATGCCGG GGATCATCCT CATAGATCTT TCCGTCGAAA ACATAGTGGT CTTATGAGTT GGCCCGAACA TTTCTACAAA
CAAAAGAACA ATGAGCAGAT ATCTGAAGGG ATTGAGCGAC AAACCTATAG TTTGTCTGCA AGGGCAGTGC ATCTGAGCAT
TTATGGGAGT ATGGTGCGCA TCCCTCGGCG GAGTAGAAGT TTGTCAAGCC ATCATGGTAG AGAACCTCAT AGTCTGTCCT
ATCCAACCAT GGAGTCCCAC CGTCCACTTG TCTCAGTGAA ATCAGAAGGA GCTGCAACTG CTAAGAAGGT CCATGAGGTC
ACAAGACAAG TTACAAATCC ACCTTCACAA AGCACAGAAC AAAGAAAACA TCATCATGGT CATGCAGAAA ATTCAAGCGA
TGATGAAGAT GTTATTGTAA GGATTGATTC ACCGAGCACT CTATCTTTTC GCTAGTCTTG AAGGTCAAGA GTCTTAGGTA
ATTATTTGTA TGTCGTGTTA TATGGTGCCT CTCTATATCA CCAGTTGTAT TTTAGTAATA GAACAAATAG TGATAATGGA
CCCTTGAGGC TGTATTTTGT TAGCAATAAA CTTGTTTGAA ACTGGGTTTT GTTACTTTAA GGTTTTTAAG TTGTACTAAA
AAATGTCATT ATAGAAATAA ATTTAGAAAA ATAATGACAT CTTTGAGATG TTTTCATTAG TGGCA

>Vigan.01G185700.01
ATGGAGCTAC TACACCAAGA GCAACAACCC GTTTCGCTTT CCCTTTCCTT TTCCCTTTCT GTTGTCTCTG ATGCTTCTGC
TCCTTCCTCT TCATCGGAAC AGTCCAGTCC AGCAGATGCA GTAATCTTCT TTGGTCTCAG TTTGGCTCTG GGGATTGCTT
GTAGGCACCT CTTGCGTGGG ACTAGAGTTC CTTACACCGT TGCCTTGCTC ATAATTGGCA TTGCACTTGG ATCTATAGAA
TATGGTACTC ATCATCGGCT GGGAAAGATT GGAGATGGAA TTCGTCTTTG GTCAGAGATT GATCCAGACC TTCTGTTAGC
TGTTTTTCTT CCTGCTCTCC TGTTTGAAAG CTCATTCTTA ATGGAAGTTC ACCAAATTAA GAGGTGTCTT GCACAAATGA
TCATACTAGC TGGTCCTGGT GTTGCGCTTT CAACTGTTTG TCTTGGAGTT GTCATGAAGC TTACTTTTCC ATACAACTGG
GGTTGGAAAA CATCACTGTT GCTTGGGGGA CTTCTGAGTG CAACAGATCC TGTTGCTGTT GTGGCTTTGT TGAAAGATCT
TGGTGCCAGC AAAAAACTAA GCACCATAAT TGAAGGGGAA TCCTTGATGA ATGATGGGAC GGCTATTGTA GTTTATACTC
TTTTCTATCG GATGGTTCTT GGAGAGACCT TCAATTGGGC TGCTATAATC AAATTTCTAG CACAAGTTTC ACTTGGAGCT
GTAGGGATGG GTCTTGCTTT TGGGATTGCA TCTGTTTTGT GGCTAGGGTT TATTTTTAAT GATACAGTGA TTGAAATTGC
TCTAACATTT GCTGTTAGCT ACATTGCTTA TTTCACTGCC CAGGAGGGTT CAGGTGTCTC AGGTGTTTTG ACGGTGATGT
CTTTGGGAAT GTTTTATTCT GCATTTGCAA GGACAGCTTT TAAGGGTGAA AGTCAACAAA GCTTACATCA CTTTTGGGAA
ATGATTGCTT ATATAGCTAA TACCTTAATT TTCATTTTGA GTGGAGTTGT CATAGCTGAA GGAATACTTG GTGACAACAA
TGTTTTCTAT CATGGAACAT CATGGACCCA CCTCTTGCTT CTCTATGTTT ATGTACAAGT GTCTCGATGC ATTGTTGTTG
GAGTATTGTT TCCCTTTCTT AGATATTTTG GATATGGTTT GGATTGGAAA GAAGCTATTA TTCTCATCTG GTCAGGATTG
CGAGGGGCAG TTGCCTTGGC ACTTTCATTA TCAGTTAAGC GTTCAAGTGG AAAATCAATT GAGTTGACTC CGGAGACAGG
AACACTGTTT GTTTTCTTCA CTGGTGGAAC TGTGTTTTTA ACACTTATAG TAAATGGGTC AACCACACAA CTCATGTTAC
GTTACCTTGG CATGGATAGT TTATCAGCAG CTAAGAGACG TATCCTTGAC TTTACAAAGC ATGAAATGTT GGACAAGGCA
TTGGAGGCTT TCAGTGAACT TGGAGATGAT GAGGAACTTG GGCCTGCTGA CTGGCCCACA GTGAAGAGAT ACATCTCTTG
CTTAAATGAC ATTGAAGGTG AACGTGTTCA CCCTCATGGT GCAACTGAAA ATGATAGTCA ACTAGATCCT ATGAACTTGA
AAGATATACG AGTACGACTA CTGAATGGTG TACAAGCTGC TTACTGGGAG ATGCTTGAGG AAGGAAGGAT TTCTCAAATA
ACAGCTAATG TCCTAATGTT ATCCGTAGAG GAAGCCATAG ATTTGGCTTC ATCTGAGTCT CTATGCGACT GGAAAGGTTT
AAAATCTAAC GTTCACTTCC CAAGTTACTA CAAGTTTCTA CAGTCCAATA TGTTCCCACC GAAGCTAGTG ACATACTTCA
CTGTACAAAG GTTGGAATCT GCATGTTATA TTTGTGCTGC ATTTCTTCGT GCTCACAGAA TTGCTCGACA ACAATTACAT
GACTTCATAG GTGACAGCGA TATTGCTTCT GCTGTCATCA ATGAAAGTGT TGTAGAAGGA GAAGAAGCAC GGAAGTTCCT
AGAAGATGTT AATGTGACAT ACCCTCAGGT TCTGCGTGTA GTAAAAACAA GGCAAGTTAC ATATGCAGTG CTACATAATT
TAATTGAATA TGTTCAAAAC CTTGAGAAGA CTGGGATATT GGAAGAGAAA GAGATGCTAC ATCTCCATGA TGCTGTCCAG
ACTGATTTGA AGAAATTACT TAGAAATCCT CCTTTGGTTA AGCTTCCTAA AATAAGTAGC ATACATCCTA TGTTGGGTGC
TCTCCCATCT TCGGTTCGTG AATCACTTGC CAACTGTACC AAGGAAATGA TGAAATTCCG TGGTGTGACA CTTTACAAGG
AAGGTGCAAA GTCAAATGGT ATTTGGTTAA TTTGTAATGG AGTAGTGAAG TGGGAAAGCA AGATGACACC AACCAAACAC
TCATTTTATC CTACTTTTAC TCATGGGAGT ACATTGGGTC TTTATGAAGT GCTGACTGGA AGACCATATA TCTGTGATGT
CATCACAGAT TCTGTAGTAT TCTGCATTTT CCTTGAAGCT GGCAAGATAA TATCATGTCT CAAATCAGAT CCTTCAACAG
AAAACTTCCT GTGGGAGGAA AGTGCTATTT TCCTTTCCAA ACTATTGGTT CCTCAGATAT TTGGGAAACT GGCTATGAAA
GATTTAAGAG CTCTTATTGC AGATCCAGAG AGATCTAGGA TGACCATATT CATAAGAGGG GAAACAATAG AAATCCCTCA
TCATTCAGTT GCCCTCTTAC TAGAAGGATA TGTAAAAACT CAAGGTCGTC AAGAACTCAT AACAGCACCA GCAGCGCTGC
TTCCTTCATC CGGGAATCTA AGCTTCCAAA ATTTGGCAGG ATCAGGTTCC AAGGGAGCTA GTTTTACTCA TCAAGGATCT
ATTTATCTAG TTGAAACTAC AGCAAGGGTA ATTCTTTTTG ACATTCCAGC ATCTGAGACC GATGCTTCTC TTGTGAGAAG
GTCAAGTTCA GTGTTACTGC ATGCCGGGGA TCATCCTCAT AGATCTTTCC GTCGAAAACA TAGTGGTCTT ATGAGTTGGC
CCGAACATTT CTACAAACAA AAGAACAATG AGCAGATATC TGAAGGGATT GAGCGACAAA CCTATAGTTT GTCTGCAAGG
GCAGTGCATC TGAGCATTTA TGGGAGTATG GTGCGCATCC CTCGGCGGAG TAGAAGTTTG TCAAGCCATC ATGGTAGAGA
ACCTCATAGT CTGTCCTATC CAACCATGGA GTCCCACCGT CCACTTGTCT CAGTGAAATC AGAAGGAGCT GCAACTGCTA
AGAAGGTCCA TGAGGTCACA AGACAAGTTA CAAATCCACC TTCACAAAGC ACAGAACAAA GAAAACATCA TCATGGTCAT
GCAGAAAATT CAAGCGATGA TGAAGATGTT ATTGTAAGGA TTGATTCACC GAGCACTCTA TCTTTTCGCT AG

>Vigan.01G185700.01
MELLHQEQQP VSLSLSFSLS VVSDASAPSS SSEQSSPADA VIFFGLSLAL GIACRHLLRG TRVPYTVALL IIGIALGSIE
YGTHHRLGKI GDGIRLWSEI DPDLLLAVFL PALLFESSFL MEVHQIKRCL AQMIILAGPG VALSTVCLGV VMKLTFPYNW
GWKTSLLLGG LLSATDPVAV VALLKDLGAS KKLSTIIEGE SLMNDGTAIV VYTLFYRMVL GETFNWAAII KFLAQVSLGA
VGMGLAFGIA SVLWLGFIFN DTVIEIALTF AVSYIAYFTA QEGSGVSGVL TVMSLGMFYS AFARTAFKGE SQQSLHHFWE
MIAYIANTLI FILSGVVIAE GILGDNNVFY HGTSWTHLLL LYVYVQVSRC IVVGVLFPFL RYFGYGLDWK EAIILIWSGL
RGAVALALSL SVKRSSGKSI ELTPETGTLF VFFTGGTVFL TLIVNGSTTQ LMLRYLGMDS LSAAKRRILD FTKHEMLDKA
LEAFSELGDD EELGPADWPT VKRYISCLND IEGERVHPHG ATENDSQLDP MNLKDIRVRL LNGVQAAYWE MLEEGRISQI
TANVLMLSVE EAIDLASSES LCDWKGLKSN VHFPSYYKFL QSNMFPPKLV TYFTVQRLES ACYICAAFLR AHRIARQQLH
DFIGDSDIAS AVINESVVEG EEARKFLEDV NVTYPQVLRV VKTRQVTYAV LHNLIEYVQN LEKTGILEEK EMLHLHDAVQ
TDLKKLLRNP PLVKLPKISS IHPMLGALPS SVRESLANCT KEMMKFRGVT LYKEGAKSNG IWLICNGVVK WESKMTPTKH
SFYPTFTHGS TLGLYEVLTG RPYICDVITD SVVFCIFLEA GKIISCLKSD PSTENFLWEE SAIFLSKLLV PQIFGKLAMK
DLRALIADPE RSRMTIFIRG ETIEIPHHSV ALLLEGYVKT QGRQELITAP AALLPSSGNL SFQNLAGSGS KGASFTHQGS
IYLVETTARV ILFDIPASET DASLVRRSSS VLLHAGDHPH RSFRRKHSGL MSWPEHFYKQ KNNEQISEGI ERQTYSLSAR
AVHLSIYGSM VRIPRRSRSL SSHHGREPHS LSYPTMESHR PLVSVKSEGA ATAKKVHEVT RQVTNPPSQS TEQRKHHHGH
AENSSDDEDV IVRIDSPSTL SFR*