GBrowse Details

Vigan.01G189300.01

Basic Information:
Name: Vigan.01G189300.01
Multiple alignment
Variant Information
Position: Chr01:23056074..23058931 (+ strand)
Length: 2858
Functional Information:
Description: Similar to Ribosomal protein S24/S35, mitochondrial. [XP_007021510.1, Theobroma cacao]
InterPro: Ribosomal protein S24/S35, mitochondrial, conserved domain (IPR019349)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:20.05,36.33,21.06,15.47,22.27,19.83,14.16,15.97
Arabidopsis thaliana homolog: AT3G18240.1
Structure :
Position: Chr01:23056074..23056127 (+ strand)
Length: 54
Type: five_prime_UTR
Position: Chr01:23056128..23056287 (+ strand)
Length: 160
Type: CDS
Position: Chr01:23056366..23056761 (+ strand)
Length: 396
Type: CDS
Position: Chr01:23057554..23057974 (+ strand)
Length: 421
Type: CDS
Position: Chr01:23058098..23058299 (+ strand)
Length: 202
Type: CDS
Position: Chr01:23058300..23058931 (+ strand)
Length: 632
Type: three_prime_UTR


>Vigan.01G189300.01
ATGTAAGGGG CAAGGGAGTA GAAACCCTAG AGTGAGAAAG AGAAACAGAG AACAATGAGA AGAACTGTTC TGAGAAATGC
AACTCTGTTC ACACGCAACC TTCTTAACTC AGCCCCTGCA CCCGCCGCTT CAACTCCTCT GCGACCAAAA CTTTTCTGCT
CCAATGGAAC TCCCCCGCCG GTTCCACAAA ACCCGGACGA CGTCGACAAC AAAGAGCTGA AGAGGCGGAT TGATATCTAC
ATGAAGGGCG ACGAGGAGGT GCTGCCGTCG ATCATGGAGG CGATTCTGCA GCGGAAGCTG TCGGGGAAGC ACGAGGAGAC
TGACGACGAG CTGATGGATG AGCTCCGCAT GCGCCCCCTT GACAATGTCG AAGACGGGGA CTTCGAATCC GATTTCGAGG
AAATCCACGA AACCGATGAG GAGCTCGACG ATTTGTACAA CGCCAGGGAT GCGGTGATGA AAAGGATGGT GAAGGACGAG
TACTTCAACA TGGATGATAA AAAATGGGAC GACATTGTTG AAGATGGGAT CAAGCACGGT TTTCTTAAGG ACACCAAGGA
GTGCGAGGAG ATTCTAGAGG ACATGCTCAG CTGGGACAAA CTCCTCCCTG ATGATATAAA GCAGAAGGTG GAAATAAAAT
TTAATGAGCT AGGGGACATG TGTGAAAGAG GAGAACTTGA ACCTGAAGAA GCTTATGAAC AATTTAAGAA GTTTGAGGAT
GAGATGGTAG CGGAATACAT GAAGATAATG GAAAAAGAGG AGGTCCTGGT CCCACAGTTT GATGATACTG CTGTGCTGGA
TAAGAAAAAG GACTCAGACG ATCCACCAGG TGAAGGTCCA ATTTTGCGGT GGCAAACTAG GGTAGTCTTT GCTCCTGGTG
GTGATGCTTG GCACCCGAAA AACAGGAAAG TGAAACTTTC TGTTACTGTG AAGGAGCTAG GGCTTTCACA ATACCAATTT
CGCCGTCTCA GAGAATTGGT TGGAAAGCGT TATCATCCAG GGAGAGACGA GCTTACAATA ACTAGTGAGA GGTATGAACA
TCGAGAAGAA AACAGAAAAG ACTGCTTAAG GACACTTCTC TCTCTCATTG AGGAGGCAGG AAAAGCTAAT AAATTAGTAG
ATGATGCCCG GGTTTCATAT GTAAAGGAGA GGCTCCGTTC CAATCCAGCA TTCATGGAGA GGTTGCTTGC GAAGTGTATG
AGGTTGCGTG AATCTAATCA GGTTACTGCT TGAAGCTTTC AGGTCTGGTG TATGAATTTT TGAACATTCA CCTGTCATAA
TTTTGTATTG CTCCCAGATT TTAGTTTCTT TCATGATTAT TATCTTTATT TTTATATATT CGAGTCTTAT CATGGTTTCC
AGTTGCGGAA ACAAGCTCGC TGCCTAGAGG AGGTTTCACA CTGATCTTTC CTAGACCCAT GGTAGGAGAC TCATGCACCG
GGCTGATATC TGTCGTATCT CTCGTATTTA GTGCTTGAAT AACGTATACT ATTTACTTCT ATCAGATATT GTATGCTAGT
GTTATGCTTT TGAGGAGTAA CACTGATCAT GGATAAGGTT GGATGACCTC AAATTGAAGC TAGGATTGCT AACATTTTCT
ACCTTTAACC ACAGAATAGA GAGAATATTT ATCTGTCAGT CATGAGACTG AATTATGTTT AATAAAGCAT TGATGCTTGA
TAAGATAAAA TTGCATTCTT CTTAAACCTT ATATAATTTA TGGACGCTCT ATTTTTAGTT TTCTTGAAAG GGTTTCTGCA
ATGTATTATC CAACATTCCA GAAAACCCAG AATTTTATGG AGGTGGAAAG AGAAAAAGCT TAAAATGTCA AGTGAAAGAC
GAAATTCTAG GAGAAGGGAT GGAGT

>Vigan.01G189300.01
ATGAGAAGAA CTGTTCTGAG AAATGCAACT CTGTTCACAC GCAACCTTCT TAACTCAGCC CCTGCACCCG CCGCTTCAAC
TCCTCTGCGA CCAAAACTTT TCTGCTCCAA TGGAACTCCC CCGCCGGTTC CACAAAACCC GGACGACGTC GACAACAAAG
AGCTGAAGAG GCGGATTGAT ATCTACATGA AGGGCGACGA GGAGGTGCTG CCGTCGATCA TGGAGGCGAT TCTGCAGCGG
AAGCTGTCGG GGAAGCACGA GGAGACTGAC GACGAGCTGA TGGATGAGCT CCGCATGCGC CCCCTTGACA ATGTCGAAGA
CGGGGACTTC GAATCCGATT TCGAGGAAAT CCACGAAACC GATGAGGAGC TCGACGATTT GTACAACGCC AGGGATGCGG
TGATGAAAAG GATGGTGAAG GACGAGTACT TCAACATGGA TGATAAAAAA TGGGACGACA TTGTTGAAGA TGGGATCAAG
CACGGTTTTC TTAAGGACAC CAAGGAGTGC GAGGAGATTC TAGAGGACAT GCTCAGCTGG GACAAACTCC TCCCTGATGA
TATAAAGCAG AAGGTGGAAA TAAAATTTAA TGAGCTAGGG GACATGTGTG AAAGAGGAGA ACTTGAACCT GAAGAAGCTT
ATGAACAATT TAAGAAGTTT GAGGATGAGA TGGTAGCGGA ATACATGAAG ATAATGGAAA AAGAGGAGGT CCTGGTCCCA
CAGTTTGATG ATACTGCTGT GCTGGATAAG AAAAAGGACT CAGACGATCC ACCAGGTGAA GGTCCAATTT TGCGGTGGCA
AACTAGGGTA GTCTTTGCTC CTGGTGGTGA TGCTTGGCAC CCGAAAAACA GGAAAGTGAA ACTTTCTGTT ACTGTGAAGG
AGCTAGGGCT TTCACAATAC CAATTTCGCC GTCTCAGAGA ATTGGTTGGA AAGCGTTATC ATCCAGGGAG AGACGAGCTT
ACAATAACTA GTGAGAGGTA TGAACATCGA GAAGAAAACA GAAAAGACTG CTTAAGGACA CTTCTCTCTC TCATTGAGGA
GGCAGGAAAA GCTAATAAAT TAGTAGATGA TGCCCGGGTT TCATATGTAA AGGAGAGGCT CCGTTCCAAT CCAGCATTCA
TGGAGAGGTT GCTTGCGAAG TGTATGAGGT TGCGTGAATC TAATCAGGTT ACTGCTTGA

>Vigan.01G189300.01
MRRTVLRNAT LFTRNLLNSA PAPAASTPLR PKLFCSNGTP PPVPQNPDDV DNKELKRRID IYMKGDEEVL PSIMEAILQR
KLSGKHEETD DELMDELRMR PLDNVEDGDF ESDFEEIHET DEELDDLYNA RDAVMKRMVK DEYFNMDDKK WDDIVEDGIK
HGFLKDTKEC EEILEDMLSW DKLLPDDIKQ KVEIKFNELG DMCERGELEP EEAYEQFKKF EDEMVAEYMK IMEKEEVLVP
QFDDTAVLDK KKDSDDPPGE GPILRWQTRV VFAPGGDAWH PKNRKVKLSV TVKELGLSQY QFRRLRELVG KRYHPGRDEL
TITSERYEHR EENRKDCLRT LLSLIEEAGK ANKLVDDARV SYVKERLRSN PAFMERLLAK CMRLRESNQV TA*