GBrowse Details

Vigan.01G192700.01

Basic Information:
Name: Vigan.01G192700.01
Multiple alignment
Variant Information
Position: Chr01:23670044..23684290 (+ strand)
Length: 14247
Functional Information:
Description: Similar to Ornithine aminotransferase. [Q38IW9, Glycine max]
GO: Molecular Function: catalytic activity (GO:0003824)
Molecular Function: transaminase activity (GO:0008483)
Molecular Function: pyridoxal phosphate binding (GO:0030170)
InterPro: Aminotransferase class-III (IPR005814)
Ornithine aminotransferase (IPR010164)
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (IPR015421)
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (IPR015422)
Pyridoxal phosphate-dependent transferase (IPR015424)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:103.89,49.67,34.94,15.77,55.12,45.96,27.45,21.16
Arabidopsis thaliana homolog: AT5G46180.1
Automatic updates:
Name: KM605253 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris ornithine aminotransferase mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001250221 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ornithine aminotransferase (LOC732572), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:23670044..23670200 (+ strand)
Length: 157
Type: five_prime_UTR
Position: Chr01:23670201..23670343 (+ strand)
Length: 143
Type: CDS
Position: Chr01:23670986..23671094 (+ strand)
Length: 109
Type: CDS
Position: Chr01:23671344..23671574 (+ strand)
Length: 231
Type: CDS
Position: Chr01:23673360..23673519 (+ strand)
Length: 160
Type: CDS
Position: Chr01:23673621..23673676 (+ strand)
Length: 56
Type: CDS
Position: Chr01:23677561..23677713 (+ strand)
Length: 153
Type: CDS
Position: Chr01:23678088..23678185 (+ strand)
Length: 98
Type: CDS
Position: Chr01:23682376..23682456 (+ strand)
Length: 81
Type: CDS
Position: Chr01:23683312..23683545 (+ strand)
Length: 234
Type: CDS
Position: Chr01:23683867..23684011 (+ strand)
Length: 145
Type: CDS
Position: Chr01:23684012..23684290 (+ strand)
Length: 279
Type: three_prime_UTR


>Vigan.01G192700.01
TTTTTAACCT ATTTCCTATC TTTTTCACTC CTGGACGCAT CATAAGCACA CGACAAATAA ATAAAAAAAG TTGGGTGAAC
ATTGTAAGAA CAAAGTAGTA CTTTCATATT ATTAAGATTT GAATACAAGG AATTTGGGAA ACCTTTGGAT CACATCAATG
GCTGCAACGA GACCGGTGCA ATGTTTGCTA AGAAAGATTT GCAAGGGAAG CAGGAGTTTT GGGGTTGCCA CTGAAGTTAA
TGCTTCCTCC TCTTCTTCTC AGAGAATCAT CGACAAGGAA TATGAACACA GTGCTCACAA TTACCATCCA CTTCCGATTG
TATTTTCTCA AGCGAAGGGA ACCTCTGTTT GGGATCCAGA GGGAAACAAA TATCTAGATT TTCTTGCTGG TTATTCTGCT
GTTAATCAGG GACACTGCCA TCCTAAAATC CTGAAAGCGT TACAAGAACA GGCAGAAAGG CTGACCGTGA GCTCTCGAGC
CTTCTATAAT GATCGTTTTC CACTCTTTGC AGAGTACGTG ACAACCATGT TTGGTTATGA TATGGTACTT CCTATGAATA
CTGGTGCTGA AGGTGTGGAA ACAGCTATGA AATTAGCACG AAAGTGGGGT TATGAAAAGA AAAGAATTCC CAGTGATGAG
GCTATTATTG TCTCATGTTG TGGCTGCTTC AATGGTCGTA CATTAGGGGT CATATCTATG AGCTGTGATA ATGAAGCTAC
CCGTGGTTTT GGTCCTTTAT TACCTGGCCA TATTAAAGTT GATTTTGGTG ATGCTGATGC CCTTGAAAGA ATTTTTAAAG
AAAAAGGAGA ATGCATAGCT GCATTTATTT TAGAACCTAT CCAAGGTGAA GCTGGGATAA TAATTCCTCC AGATGGTTAT
TTAAAAGCTG TTAGAGATCT TTGCTCCAAA TATAATATCT TGATGATTGC TGATGAAATA CAATCTGGGT TAGGAAGAAC
AGGGAAGATG CTGGCTTGTG AATGGGAAGA AGTTCGCCCA GATGTTGTGG TACTCGGTAA AGCACTGGGT GGAGGTGTTT
TACCAGTTAG TGCAGTTCTT GCAGACAAAG ATGTGATGCT TTGTATACAA CCTGGACAGC ATGGAAGCAC TTTTGGTGGA
AATCCGTTGG CCAGTGCAGT TGCAATTGCC TCACTAGAAG TGATAAAAAA TGAAAAACTA GTTGAGAGAT CTGTCCAAAT
GGGAGAGAAG CTAATGGGTC AACTTCTTGA GATTCAACAG CAATACCCAG ATTATGTGAA GGAGGTACGG GGAAGAGGAT
TATTCATTGG AGTGGAGTTC AAAAGAAAAA ACTTGTTCCC TGCATCGGTG TATGAGCTTA GTGAAAAATT GAAGGAAAGA
GCAGTCCTTG CCAAGCCAAC ACATGAAACT ATAATCCGCT TTACTCCACC ACTTTCCATA AGTGAGGATG AGATCCAACA
AGGTTCTAAG GCCCTGGCTG ATGTTTTGGA AATTGATGTT CCAAAGTTGC AGAAGGAGAA GCCAAGAGAA GCTGCTCCAG
TTGCATCTAG TGCATGTGAT CGTTGTGGTA GAGTCATGTA TGATTAATCA GATAATGGTA TATGGTTTGC ACCTACCTTT
AGTTTTCCTT GGATAAAAAA TTATATCATA TGAAGAATGC TTTGCCCTGT GCATGAAAAC TGCGTTCAAA TATTCCATAT
ATTATGAAAT AAATATGCCA CGGAACAGAA GGGTCATTTC TTTCCAAATC TAAGTGTGGA ATGAACCTGT GTCCTACAAG
TTCATGGTAG TGAAAGTATG AAAGATTCTA CAAATTGGTT TATTTATAAC TTAATTATAT TTTAAAAGAT TTTCATTTTT
TTAAAA

>Vigan.01G192700.01
ATGGCTGCAA CGAGACCGGT GCAATGTTTG CTAAGAAAGA TTTGCAAGGG AAGCAGGAGT TTTGGGGTTG CCACTGAAGT
TAATGCTTCC TCCTCTTCTT CTCAGAGAAT CATCGACAAG GAATATGAAC ACAGTGCTCA CAATTACCAT CCACTTCCGA
TTGTATTTTC TCAAGCGAAG GGAACCTCTG TTTGGGATCC AGAGGGAAAC AAATATCTAG ATTTTCTTGC TGGTTATTCT
GCTGTTAATC AGGGACACTG CCATCCTAAA ATCCTGAAAG CGTTACAAGA ACAGGCAGAA AGGCTGACCG TGAGCTCTCG
AGCCTTCTAT AATGATCGTT TTCCACTCTT TGCAGAGTAC GTGACAACCA TGTTTGGTTA TGATATGGTA CTTCCTATGA
ATACTGGTGC TGAAGGTGTG GAAACAGCTA TGAAATTAGC ACGAAAGTGG GGTTATGAAA AGAAAAGAAT TCCCAGTGAT
GAGGCTATTA TTGTCTCATG TTGTGGCTGC TTCAATGGTC GTACATTAGG GGTCATATCT ATGAGCTGTG ATAATGAAGC
TACCCGTGGT TTTGGTCCTT TATTACCTGG CCATATTAAA GTTGATTTTG GTGATGCTGA TGCCCTTGAA AGAATTTTTA
AAGAAAAAGG AGAATGCATA GCTGCATTTA TTTTAGAACC TATCCAAGGT GAAGCTGGGA TAATAATTCC TCCAGATGGT
TATTTAAAAG CTGTTAGAGA TCTTTGCTCC AAATATAATA TCTTGATGAT TGCTGATGAA ATACAATCTG GGTTAGGAAG
AACAGGGAAG ATGCTGGCTT GTGAATGGGA AGAAGTTCGC CCAGATGTTG TGGTACTCGG TAAAGCACTG GGTGGAGGTG
TTTTACCAGT TAGTGCAGTT CTTGCAGACA AAGATGTGAT GCTTTGTATA CAACCTGGAC AGCATGGAAG CACTTTTGGT
GGAAATCCGT TGGCCAGTGC AGTTGCAATT GCCTCACTAG AAGTGATAAA AAATGAAAAA CTAGTTGAGA GATCTGTCCA
AATGGGAGAG AAGCTAATGG GTCAACTTCT TGAGATTCAA CAGCAATACC CAGATTATGT GAAGGAGGTA CGGGGAAGAG
GATTATTCAT TGGAGTGGAG TTCAAAAGAA AAAACTTGTT CCCTGCATCG GTGTATGAGC TTAGTGAAAA ATTGAAGGAA
AGAGCAGTCC TTGCCAAGCC AACACATGAA ACTATAATCC GCTTTACTCC ACCACTTTCC ATAAGTGAGG ATGAGATCCA
ACAAGGTTCT AAGGCCCTGG CTGATGTTTT GGAAATTGAT GTTCCAAAGT TGCAGAAGGA GAAGCCAAGA GAAGCTGCTC
CAGTTGCATC TAGTGCATGT GATCGTTGTG GTAGAGTCAT GTATGATTAA 

>Vigan.01G192700.01
MAATRPVQCL LRKICKGSRS FGVATEVNAS SSSSQRIIDK EYEHSAHNYH PLPIVFSQAK GTSVWDPEGN KYLDFLAGYS
AVNQGHCHPK ILKALQEQAE RLTVSSRAFY NDRFPLFAEY VTTMFGYDMV LPMNTGAEGV ETAMKLARKW GYEKKRIPSD
EAIIVSCCGC FNGRTLGVIS MSCDNEATRG FGPLLPGHIK VDFGDADALE RIFKEKGECI AAFILEPIQG EAGIIIPPDG
YLKAVRDLCS KYNILMIADE IQSGLGRTGK MLACEWEEVR PDVVVLGKAL GGGVLPVSAV LADKDVMLCI QPGQHGSTFG
GNPLASAVAI ASLEVIKNEK LVERSVQMGE KLMGQLLEIQ QQYPDYVKEV RGRGLFIGVE FKRKNLFPAS VYELSEKLKE
RAVLAKPTHE TIIRFTPPLS ISEDEIQQGS KALADVLEID VPKLQKEKPR EAAPVASSAC DRCGRVMYD*