VIGGS:GBrowse

Vigan.01G193100.01

Basic Information:

Name:	Vigan.01G193100.01 Multiple alignment Variant Information
Position:	Chr01:23724224..23733494 (+ strand)
Length:	9271

Functional Information:

Description:	Similar to Uncharacterized protein. [I1KRU6, Glycine max]
GO:	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: catalytic activity (GO:0003824)
	Molecular Function: FMN binding (GO:0010181)
	Molecular Function: oxidoreductase activity (GO:0016491)
InterPro:	FMN-dependent dehydrogenase (IPR000262)
	FMN-dependent alpha-hydroxy acid dehydrogenase, active site (IPR008259)
	Alpha-hydroxy acid dehydrogenase, FMN-dependent (IPR012133)
	Aldolase-type TIM barrel (IPR013785)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:10.10,5.31,16.39,1.22,53.20,20.83,19.47,7.79
Arabidopsis thaliana homolog:	AT3G14415.2, AT3G14420.1, AT4G18360.1

Automatic updates:

Name:	NM_001254986 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like (LOC100800520), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001255456 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max peroxisomal (S)-2-hydroxy-acid oxidase GLO5-like (LOC100782977), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001371809 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max (S)-2-hydroxy-acid oxidase GLO1 (LOC100170736), mRNA.
PubMed ID:	18281324 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001371810 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max (S)-2-hydroxy-acid oxidase GLO1 (LOC100170736), mRNA.
PubMed ID:	18281324 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001371813 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like (LOC100798937), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:23724224..23724798 (+ strand)
Length:	575
Type:	five_prime_UTR

Position:	Chr01:23724799..23724938 (+ strand)
Length:	140
Type:	CDS

Position:	Chr01:23725160..23725284 (+ strand)
Length:	125
Type:	CDS

Position:	Chr01:23725710..23725756 (+ strand)
Length:	47
Type:	CDS

Position:	Chr01:23725913..23725990 (+ strand)
Length:	78
Type:	CDS

Position:	Chr01:23726409..23726533 (+ strand)
Length:	125
Type:	CDS

Position:	Chr01:23726666..23726732 (+ strand)
Length:	67
Type:	CDS

Position:	Chr01:23726850..23726912 (+ strand)
Length:	63
Type:	CDS

Position:	Chr01:23726990..23727059 (+ strand)
Length:	70
Type:	CDS

Position:	Chr01:23727168..23727268 (+ strand)
Length:	101
Type:	CDS

Position:	Chr01:23732563..23732667 (+ strand)
Length:	105
Type:	CDS

Position:	Chr01:23732977..23733162 (+ strand)
Length:	186
Type:	CDS

Position:	Chr01:23733163..23733494 (+ strand)
Length:	332
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G193100.01
GTAAGTTTTT GTTTTTCTAA TTGGTTATGA CACGTTTTAA GTTTGTTTGG CACTCTTATT TCATAGTTAC TTTAATTTTC
GTGCTAAGGT TTGCAATTCA TTGTTTTGGG TACTGTTTGA GGTTTAAGCA GTTTGAAAGT TTTGATCTTT AAGCTACTGG
GTTGTTCTTT TGTCACGGGT TTCTTCTGAA TCTGATCCTG GCTCATCAGA GTGTAAAATA AAGTGATCCT TTTAGTGGAA
TTGCTATCAA TATCAAATAA AGTAAAATGG TCCCCGTAAA ATGGGATCTG TTTTCTCTGA AGTGAACACA CAACAAATCA
TGAAACTAAA GTTTTGATAT GAAAATTTCA GAAGATCCTG CTTTCATGCG TGGACTGATC AATCTTTCAT TTGATGGCGA
TTAATTGAAA TATCATTCAT GAACCCAAAA GACTAAGTTT GAAATATTCG TATTTCATGC TTGCATACCA TCTTTGCGTC
GAAATGCATT TGATCTCATT TAATCTAATT TGATCACTAT ACTTCAAACT CACTTTCAGC ATATCCTGCG GACTTCGTAA
GTCACTCTTG TGAAAATGGA GATGATAACT AATGTTACAG AGTATGAAGC AATTGCAAAG GAAAAATTGC CAAAGATGGT
TTATGACTAC TATGCATCAG GGGCAGAGGA TCAGTGGACT TTGAAAGAGA ATCGAAATGC ATTCGCAAGG ATTCTATTCC
GGCCACGTAT TCTTGTTGAT GTAAGCAGGA TAGACTTGAC TGCAACTATA TTGGGCTTCA AAGTTTCAAT GCCTATCATG
ATTGCTCCGA CAGCCATGCA GAAGATGGCT CACCCTGAAG GAGAATTCGC TACTGCAAGA GCAGCATCAG CAGCTGGCAC
AATCATGACA CTATCGTCTT GGGCCACTTC CAGTGTTGAG GAGGTTGCTT CAACAGGTCC TGGCATTCGT TTTTTTCAGC
TCTATGTGTT TAAAGACAGA AATGTAGTTG CTCAGCTTGT GAGGAGAGCT GAAAGAGCTG GTTTCAAGGC AATTGCCCTT
ACTGTGGACA CTCCAATTCT TGGTCGTAGG GAGGCTGACA TCAAAAACAG ATTTACATTG CCACCGCACT TGATATTGAA
GAATTTTGAA GGATTGGATC TTGGAAAGCT GGACAAGACT AAAGACTCTG GTCTTGCGTC TTATGTTGCT GGACAAATTG
ATCGGTCACT CAACTGGAAG GATATCAGCT GGCTTCAAAC AATCACGTCA TTGCCAATTT TAGTAAAGGG TGTACTTACT
GCTGAAGATA CAAGGCTAGC CTTAAAAGCT GGTGCTGCTG GAATCATTGT TTCCAATCAT GGAGCTCGTC AACTAGACTA
TGTTCCAGCA ACTATTTCAG CTTTGGAAGA GGTAGTTAAA GCTGCAGAAG GAAGAATTCC AGTTTTTCTG GATGGTGGAG
TTCGCCGAGG AACAGATGTT TTTAAAGCAC TAGCTCTTGG AGCAGCTGGT GTGTTTATTG GTAGACCTGT GTTGTTTTCA
TTGGCTGCTG ATGGAGAGGC TGGTGTGAGA AAAGTACTTC AAATGCTTCG TGATGAGTTT GAACTAACTA TGGCACTAAC
CGGTTGCCGT TCACTCAAGG AGATAAGTCG TGACCATGTT ATCACAGAGT GGGATCGCCC AAGAATTTCT CCCAAGTTAT
GAGGTGGCTG GACTCAACCT TGGTCTTCTA TGTTCTAAAG TAGGAATTTT AGAATATCCT TTGATCTCAT TTCATGCTTC
AATGGAAAAC CTGTGTTTCA TCCATTAGAA ATTTGCTGCT TTATTCACTG TACATAACAT GTTTCTACCT GGACTCATTT
CATTGCACTT GGTGCTTGTA TTTGGAAAAC TGCAGAAACA TGATCGCCAA TAAAATGTAC TTTTTTCTTG GCAAAATCTC
AACTTTTGTG ATATCATGTA TCAGAAGAGT TAGACTAGTT TTATCAATAT CCTAAAACTG TCACACTTCA AAAGCAAATT
TAAATGAATA TGCG

[show][hide][copy]CDS

>Vigan.01G193100.01
ATGGAGATGA TAACTAATGT TACAGAGTAT GAAGCAATTG CAAAGGAAAA ATTGCCAAAG ATGGTTTATG ACTACTATGC
ATCAGGGGCA GAGGATCAGT GGACTTTGAA AGAGAATCGA AATGCATTCG CAAGGATTCT ATTCCGGCCA CGTATTCTTG
TTGATGTAAG CAGGATAGAC TTGACTGCAA CTATATTGGG CTTCAAAGTT TCAATGCCTA TCATGATTGC TCCGACAGCC
ATGCAGAAGA TGGCTCACCC TGAAGGAGAA TTCGCTACTG CAAGAGCAGC ATCAGCAGCT GGCACAATCA TGACACTATC
GTCTTGGGCC ACTTCCAGTG TTGAGGAGGT TGCTTCAACA GGTCCTGGCA TTCGTTTTTT TCAGCTCTAT GTGTTTAAAG
ACAGAAATGT AGTTGCTCAG CTTGTGAGGA GAGCTGAAAG AGCTGGTTTC AAGGCAATTG CCCTTACTGT GGACACTCCA
ATTCTTGGTC GTAGGGAGGC TGACATCAAA AACAGATTTA CATTGCCACC GCACTTGATA TTGAAGAATT TTGAAGGATT
GGATCTTGGA AAGCTGGACA AGACTAAAGA CTCTGGTCTT GCGTCTTATG TTGCTGGACA AATTGATCGG TCACTCAACT
GGAAGGATAT CAGCTGGCTT CAAACAATCA CGTCATTGCC AATTTTAGTA AAGGGTGTAC TTACTGCTGA AGATACAAGG
CTAGCCTTAA AAGCTGGTGC TGCTGGAATC ATTGTTTCCA ATCATGGAGC TCGTCAACTA GACTATGTTC CAGCAACTAT
TTCAGCTTTG GAAGAGGTAG TTAAAGCTGC AGAAGGAAGA ATTCCAGTTT TTCTGGATGG TGGAGTTCGC CGAGGAACAG
ATGTTTTTAA AGCACTAGCT CTTGGAGCAG CTGGTGTGTT TATTGGTAGA CCTGTGTTGT TTTCATTGGC TGCTGATGGA
GAGGCTGGTG TGAGAAAAGT ACTTCAAATG CTTCGTGATG AGTTTGAACT AACTATGGCA CTAACCGGTT GCCGTTCACT
CAAGGAGATA AGTCGTGACC ATGTTATCAC AGAGTGGGAT CGCCCAAGAA TTTCTCCCAA GTTATGA

[show][hide][copy]PROTEIN

>Vigan.01G193100.01
MEMITNVTEY EAIAKEKLPK MVYDYYASGA EDQWTLKENR NAFARILFRP RILVDVSRID LTATILGFKV SMPIMIAPTA
MQKMAHPEGE FATARAASAA GTIMTLSSWA TSSVEEVAST GPGIRFFQLY VFKDRNVVAQ LVRRAERAGF KAIALTVDTP
ILGRREADIK NRFTLPPHLI LKNFEGLDLG KLDKTKDSGL ASYVAGQIDR SLNWKDISWL QTITSLPILV KGVLTAEDTR
LALKAGAAGI IVSNHGARQL DYVPATISAL EEVVKAAEGR IPVFLDGGVR RGTDVFKALA LGAAGVFIGR PVLFSLAADG
EAGVRKVLQM LRDEFELTMA LTGCRSLKEI SRDHVITEWD RPRISPKL*