GBrowse Details

Vigan.01G198600.01

Basic Information:
Name: Vigan.01G198600.01
Multiple alignment
Variant Information
Position: Chr01:25027983..25030657 (+ strand)
Length: 2675
Functional Information:
Description: Similar to Remorin family protein. [XP_007045008.1, Theobroma cacao]
InterPro: Remorin, C-terminal (IPR005516)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.35,54.04,5.04,0.63,0.49,17.95,6.31,1.64
Arabidopsis thaliana homolog: AT1G67590.1
Automatic updates:
Name: NM_001354641 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max remorin C-terminal domain-containing protein (LOC100500158), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:25027983..25028482 (+ strand)
Length: 500
Type: five_prime_UTR
Position: Chr01:25028483..25029258 (+ strand)
Length: 776
Type: CDS
Position: Chr01:25029518..25029599 (+ strand)
Length: 82
Type: CDS
Position: Chr01:25030318..25030533 (+ strand)
Length: 216
Type: CDS
Position: Chr01:25030534..25030657 (+ strand)
Length: 124
Type: three_prime_UTR


>Vigan.01G198600.01
CTCTGTTTTA AGTTCTCATA CTACATCTCT AAGACTTTGA CAACATAGAT TCAAAGGTGT AACTTGATGA GTGACTGTAT
TTTGTTTCCA AGCATTGCAC CTAAGGATTT ATTTAGTTCT TTGTTCATTT TAGGTAAAAG GTTTTCAGGA TTGAATGCTT
GAGACTGAAG TATTTGTCTA GGTTCATTAG GGTGTCCTTG TTTCAGTAAC AAGAGTTACT TTACATAGCT ATTTTGACAT
TTTTATGCTT CATGTTTGTA GATACAACTA AACAGACATG CAAGGCTCTA TAGTACTAAA CTTCAATCTA GATTAGGCCA
GTATTGTATA TATCTTTGTT CAGAGTATTA ACAAGATCTC ATACATAACA TGGATTATAC TGATTTTCTC TATATAGGAT
CTAAAGCAGA AATTATAGAT CCTAAAAATT TTCACTGTGT AGAGTTTGGA CCACCATTGT TCTACTCGAA AGATTGAGTT
TGTGAAAGAC ATCTTTGGAA ATGAGATACG TAGAAGACAA AGGGTGCTAT AACAATCATG GACCAACACA AGAGATCCCA
AATAACAGTG CTGTGTATTC AGAGTTTCAC AAAGGAAAGG ACGCTACTAC TCGTATCCCC CACCACCATC GAACAACTAT
GGGAAAACCA ACCCCTTCTA AGTGGGATGA TGCACAAAAG TGGCTTGTGG GACTGTCAAA AGGAGGAGAG AAAAGTCACT
CCAAAAACAG ACCAAGAAAC TCAAACGCAG ATGATTTGAG ACTGATAGCT CCTGTGCCAC AGAAGGAGCA TGATTACTCA
AGTAGTGAGA AGGAAGAGGA AGACAATGAT GCATCTCATG ATTTGGTGAC TACTTCTAGT GCCAATGCCA TTGCTGCTCA
ATATGAAGCT GATGCCAAAA GGGTAGAATG TGACGACTCA AATTGGAGAA ACAGTATTAA GCCTTCAGAA AACACAATCC
AGGTCCAATC AATATGTTTC AGAGACATGG GAACTGAGAT GACACCAATT GCTAGTCAAG AGCCTTCAAG AACTGGCACC
CCAATTAGAG CCACAACTCC TGCAACTAGA AGCCCTATTC ATTCAGGGAA CTCAACCCCA ATGAGGGGTC AAAATGGGTT
GCAAGTTGTT GAGGTTGACC GTAACACTGC TAGGCACACT GCAGAAGGAT CAACAAGCCC CTGCAAGAGG ATTGAAGATC
AAGCTAGAAA GTTGAGTCCT CTAGAAAGTC GAGCAATGGC TTGGGATGAG GCAGAACGTG CCAAATACAT GGCCAGGTTC
AAGCGTGAAG AGGTGAAGAT TCAAGCCTGG GAAAATCACC AGATTAGAAA AGCTGAAATG GAGATGAAGA AAATGGAGGT
GAAAGCTGAG AGAATGAAAG CTTTGGCACA AGAAAGGTTT GCAAATAAAC TGGCTTCGAC TAAGAGGGTA GCTGAAGAGA
AACGGGCAAA TGCACAGGTG AAGCTGAATG ACAAGGCTTT GAGGACTACC GAAAGGGTAG AGTATATACG TCGAACAGGA
CATGTGCCAT CTTCTTTCTC TTTCAACTTT AAGTTGCCTT CCATGTGTTG GTAGCAATTT TGCAATTTTG CAATTTTGCA
ACTGTTTGTC CGAAATATGA AACTTTTCCT GTCTATCCCA TCACAATTTA CTGTGCTACT TCTAAAATAA TATTGCAAGT
TCCATGCTGT TTTCTTCC

>Vigan.01G198600.01
ATGAGATACG TAGAAGACAA AGGGTGCTAT AACAATCATG GACCAACACA AGAGATCCCA AATAACAGTG CTGTGTATTC
AGAGTTTCAC AAAGGAAAGG ACGCTACTAC TCGTATCCCC CACCACCATC GAACAACTAT GGGAAAACCA ACCCCTTCTA
AGTGGGATGA TGCACAAAAG TGGCTTGTGG GACTGTCAAA AGGAGGAGAG AAAAGTCACT CCAAAAACAG ACCAAGAAAC
TCAAACGCAG ATGATTTGAG ACTGATAGCT CCTGTGCCAC AGAAGGAGCA TGATTACTCA AGTAGTGAGA AGGAAGAGGA
AGACAATGAT GCATCTCATG ATTTGGTGAC TACTTCTAGT GCCAATGCCA TTGCTGCTCA ATATGAAGCT GATGCCAAAA
GGGTAGAATG TGACGACTCA AATTGGAGAA ACAGTATTAA GCCTTCAGAA AACACAATCC AGGTCCAATC AATATGTTTC
AGAGACATGG GAACTGAGAT GACACCAATT GCTAGTCAAG AGCCTTCAAG AACTGGCACC CCAATTAGAG CCACAACTCC
TGCAACTAGA AGCCCTATTC ATTCAGGGAA CTCAACCCCA ATGAGGGGTC AAAATGGGTT GCAAGTTGTT GAGGTTGACC
GTAACACTGC TAGGCACACT GCAGAAGGAT CAACAAGCCC CTGCAAGAGG ATTGAAGATC AAGCTAGAAA GTTGAGTCCT
CTAGAAAGTC GAGCAATGGC TTGGGATGAG GCAGAACGTG CCAAATACAT GGCCAGGTTC AAGCGTGAAG AGGTGAAGAT
TCAAGCCTGG GAAAATCACC AGATTAGAAA AGCTGAAATG GAGATGAAGA AAATGGAGGT GAAAGCTGAG AGAATGAAAG
CTTTGGCACA AGAAAGGTTT GCAAATAAAC TGGCTTCGAC TAAGAGGGTA GCTGAAGAGA AACGGGCAAA TGCACAGGTG
AAGCTGAATG ACAAGGCTTT GAGGACTACC GAAAGGGTAG AGTATATACG TCGAACAGGA CATGTGCCAT CTTCTTTCTC
TTTCAACTTT AAGTTGCCTT CCATGTGTTG GTAG

>Vigan.01G198600.01
MRYVEDKGCY NNHGPTQEIP NNSAVYSEFH KGKDATTRIP HHHRTTMGKP TPSKWDDAQK WLVGLSKGGE KSHSKNRPRN
SNADDLRLIA PVPQKEHDYS SSEKEEEDND ASHDLVTTSS ANAIAAQYEA DAKRVECDDS NWRNSIKPSE NTIQVQSICF
RDMGTEMTPI ASQEPSRTGT PIRATTPATR SPIHSGNSTP MRGQNGLQVV EVDRNTARHT AEGSTSPCKR IEDQARKLSP
LESRAMAWDE AERAKYMARF KREEVKIQAW ENHQIRKAEM EMKKMEVKAE RMKALAQERF ANKLASTKRV AEEKRANAQV
KLNDKALRTT ERVEYIRRTG HVPSSFSFNF KLPSMCW*