VIGGS:GBrowse

Vigan.01G205500.01

Basic Information:

Name:	Vigan.01G205500.01 Multiple alignment Variant Information
Position:	Chr01:26284923..26287709 (+ strand)
Length:	2787

Functional Information:

Description:	Similar to Uncharacterized protein. [I1K3M8, Glycine max]
GO:	Biological Process: transport (GO:0006810)
GO:	Cellular Component: intracellular (GO:0005622)
InterPro:	Nuclear transport factor 2 (IPR002075)
InterPro:	Nuclear transport factor 2, eukaryote (IPR018222)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:152.33,99.35,111.86,109.53,216.67,267.47,162.09,128.92
Arabidopsis thaliana homolog:	AT1G27970.2

Automatic updates:

Name:	NM_001253343 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max nuclear transport factor 2-like (LOC100777334), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:26284923..26284970 (+ strand)
Length:	48
Type:	five_prime_UTR

Position:	Chr01:26284971..26285267 (+ strand)
Length:	297
Type:	CDS

Position:	Chr01:26287152..26287226 (+ strand)
Length:	75
Type:	CDS

Position:	Chr01:26287227..26287709 (+ strand)
Length:	483
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G205500.01
GGGTATATAA GGAGGGGGAA AGAAAGAGAG TGTGGGAGAG TGGGAGAGAT GGATCCAGAC AATTTGGCAA AGGCATTCGT
AGATCACTAC TACAGCACCT TCGACAACAA CCGCCCAAGC CTGGCCGGTC TCTACCAGGA TGCTTCCATG CTCACCTTTG
AAGGCCAGAA GATCCAGGGC GCTTCCAACA TCGTCGCCAA GCTCACTTCC CTCCCTTTTC AGCAGTGCCA CCACTCCATC
TCCACCGTCG ACTGCCAACC TTCCGGTGCC AGCGGCGGCA TGCTCGTCTT CGTCAGCGGC AGCCTCCAGC TCGCCGGCGA
ACAACACACT CTCAAATTCA GCCAGATGTT CCATTTGATG CCAACTCCGC AGGCAAGCTA TTATGTGTTG AATGATATAT
TCCGTTTGAA CTATGCATGA AGATAGACCA TCAAATACAT GAGCTGAAAG GCCATAGAAG AAGTTTGCCC TATAGCTAGC
TGTTTCAGAT TGGACATTTG AAATTGAAAA AGGGTTATTT TTGGTTGGTT GTGTTGAATC CTTAATTGTC TGCTGTGTTT
AGAATTTTCT GTCGTGACTG ATTTGAAGAA AACCTTCAAG GATAAATTGT TGAAAGATTA CTGGGTATTG GAGATTGAAA
ACTTTAATAT ATTTGTGATC TGAGATATTG GATCCAAGCA TCTTGATCCA TTTTCCCTTT ATTAATTAGT TTATGCTTGC
AGTTATAACA TAATGTTTTT GTTCACCTAA GGAACCAATG ACGTTTGTTC AAGCATCTCT CATACCATGA GGGCTGTTTG
TCTTTTCTCT TCTTACCCGT AAAAGTTAAT CAATTTAGAT GTTATTTGGG GTTGTTGATT TGTAAATATA TTAACTTCAA
TAGCATAATA ATTGAGGAGC AGG

[show][hide][copy]CDS

>Vigan.01G205500.01
ATGGATCCAG ACAATTTGGC AAAGGCATTC GTAGATCACT ACTACAGCAC CTTCGACAAC AACCGCCCAA GCCTGGCCGG
TCTCTACCAG GATGCTTCCA TGCTCACCTT TGAAGGCCAG AAGATCCAGG GCGCTTCCAA CATCGTCGCC AAGCTCACTT
CCCTCCCTTT TCAGCAGTGC CACCACTCCA TCTCCACCGT CGACTGCCAA CCTTCCGGTG CCAGCGGCGG CATGCTCGTC
TTCGTCAGCG GCAGCCTCCA GCTCGCCGGC GAACAACACA CTCTCAAATT CAGCCAGATG TTCCATTTGA TGCCAACTCC
GCAGGCAAGC TATTATGTGT TGAATGATAT ATTCCGTTTG AACTATGCAT GA

[show][hide][copy]PROTEIN

>Vigan.01G205500.01
MDPDNLAKAF VDHYYSTFDN NRPSLAGLYQ DASMLTFEGQ KIQGASNIVA KLTSLPFQQC HHSISTVDCQ PSGASGGMLV
FVSGSLQLAG EQHTLKFSQM FHLMPTPQAS YYVLNDIFRL NYA*