VIGGS:GBrowse

Vigan.01G212700.01

Basic Information:

Name:	Vigan.01G212700.01 Multiple alignment Variant Information
Position:	Chr01:27757526..27761384 (+ strand)
Length:	3859

Functional Information:

Description:	Similar to Uncharacterized protein. [I1M049, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	Small GTPase superfamily, ARF type (IPR024156)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:11.60,7.51,5.79,6.04,12.05,11.58,0.08,7.03

Automatic updates:

Name:	NM_001248120 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max rab GTPase family 11 protein (LOC100527366), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001248268 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max Rab GTPase family 11-like protein (LOC100306448), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:27757526..27757871 (+ strand)
Length:	346
Type:	five_prime_UTR

Position:	Chr01:27757872..27758092 (+ strand)
Length:	221
Type:	CDS

Position:	Chr01:27760662..27761094 (+ strand)
Length:	433
Type:	CDS

Position:	Chr01:27761095..27761384 (+ strand)
Length:	290
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G212700.01
GAAAAAACCA ACCAAAGATG ATGAATGAGC TTCCTCTTCA GTTCTCAATA TTGTTTGGGA ATCAACACCA ATCAAATATG
GTTTGGTTAA GGCAAACTAC TAAATGTATT TTCGTTGCTA TTTACTTAAT TTTGGAGGCA TGGGTGTAAC CCATTGTACT
TTTTTTTATG GAACTAGTTG TAAATTTGTT AACATTACAA AAGTGAAGTC CGCTTTTGTA TCACCCTTCT TCCAAATCTG
GGTTTTTTCT TTTTAATTCA AATTCCAACA TTTTTTTCCT CCCTTTCACT TTTCTCCTTT CACTCTCTCC AAATCCATAC
ATACACAATA AAAGGAGGAA CAACAAATGG GGGCGTACAG AGCCGACGAC GATTACGATT ACTTGTTCAA GGTGGTTCTG
ATCGGCGACT CCGGCGTCGG CAAATCGAAC CTTCTTTCTC GATTCACGCG AAACGAATTC AGCCTCGAAT CCAAGTCTAC
CATTGGCGTT GAGTTCGCCA CCAGAAGCAT TCGCGTCGAT GACAAGGTTG TCAAGGCTCA GATTTGGGAC ACTGCTGGCC
AAGAAAGGTA CCGAGCTATT ACAAGTGCAT ATTATCGTGG AGCTGTTGGT GCTTTACTAG TCTATGATGT TACGCGTCAT
GTTACTTTTG AAAATGTGGA GAGATGGCTA AAAGAGCTGA GAGATCATAC AGATGCCAAC ATTGTGGTGA TGCTTGTAGG
GAACAAAGCA GACCTGCGTC ATCTGCGAGC AGTTTCCACC GAAGATGCTA CAACTTTCGC CCAGCGAGAG AGAACATTTT
TTATGGAAAC ATCTGCCCTC GAATCGTTGA ACGTTGGAAA TGCCTTCACA GAAGTGCTGA CTCAGATCTA TCATGTTGTA
AGCAAGAAGG CCCTTGAGAT TGGAGACGAT CCAGCAGCTT TACCGAAAGG GCAGACAATT AGTGTTGGTT CCCGTGATGA
TGTATCAGCT GTGAAGCAAG GTGGATGTTG TTCTGCTTGA GTGTGTAGTA CAAGTCAGTC TCTGTATTTT TACTTTTAAA
CACATGCCTT GTTTATACCA TGTAGAGATT CACCTCACAA CATGAATATG ATTGTTTAAA GAGCATCGAA CTTTAGTTTC
TGCTTCGGTT TGTAGAGAAT TATGTTCAAT ATTAGGCAGA TATTTTTTAG GAAACATGCA CATTCGTTTT GGCAGCTTTC
CCATTTTTGT GCATTTTAAG ATATTTAGTT ATTTAATGTC CAATTTATCA GTGTCGTCGT TCTTTTCTAA TCTTATCACC
TCTATTTGTC

[show][hide][copy]CDS

>Vigan.01G212700.01
ATGGGGGCGT ACAGAGCCGA CGACGATTAC GATTACTTGT TCAAGGTGGT TCTGATCGGC GACTCCGGCG TCGGCAAATC
GAACCTTCTT TCTCGATTCA CGCGAAACGA ATTCAGCCTC GAATCCAAGT CTACCATTGG CGTTGAGTTC GCCACCAGAA
GCATTCGCGT CGATGACAAG GTTGTCAAGG CTCAGATTTG GGACACTGCT GGCCAAGAAA GGTACCGAGC TATTACAAGT
GCATATTATC GTGGAGCTGT TGGTGCTTTA CTAGTCTATG ATGTTACGCG TCATGTTACT TTTGAAAATG TGGAGAGATG
GCTAAAAGAG CTGAGAGATC ATACAGATGC CAACATTGTG GTGATGCTTG TAGGGAACAA AGCAGACCTG CGTCATCTGC
GAGCAGTTTC CACCGAAGAT GCTACAACTT TCGCCCAGCG AGAGAGAACA TTTTTTATGG AAACATCTGC CCTCGAATCG
TTGAACGTTG GAAATGCCTT CACAGAAGTG CTGACTCAGA TCTATCATGT TGTAAGCAAG AAGGCCCTTG AGATTGGAGA
CGATCCAGCA GCTTTACCGA AAGGGCAGAC AATTAGTGTT GGTTCCCGTG ATGATGTATC AGCTGTGAAG CAAGGTGGAT
GTTGTTCTGC TTGA

[show][hide][copy]PROTEIN

>Vigan.01G212700.01
MGAYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIRVDDK VVKAQIWDTA GQERYRAITS
AYYRGAVGAL LVYDVTRHVT FENVERWLKE LRDHTDANIV VMLVGNKADL RHLRAVSTED ATTFAQRERT FFMETSALES
LNVGNAFTEV LTQIYHVVSK KALEIGDDPA ALPKGQTISV GSRDDVSAVK QGGCCSA*