VIGGS:GBrowse

Vigan.01G214300.01

Basic Information:

Name:	Vigan.01G214300.01 Multiple alignment Variant Information
Position:	Chr01:28022426..28026626 (- strand)
Length:	4201

Functional Information:

Description:	Similar to isoflavone 4'-O-methyltransferase. [XP_003542715.1, Glycine max]
GO:	Molecular Function: methyltransferase activity (GO:0008168)
	Molecular Function: O-methyltransferase activity (GO:0008171)
	Molecular Function: protein dimerization activity (GO:0046983)
InterPro:	O-methyltransferase, family 2 (IPR001077)
	Winged helix-turn-helix DNA-binding domain (IPR011991)
	Plant methyltransferase dimerisation (IPR012967)
	Caffeate O-methyltransferase (COMT) family (IPR016461)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.02,0.05,0.00,0.11,0.52,0.30

Automatic updates:

Name:	NM_001366914 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max isoflavone 4'-O-methyltransferase (IOMT1), mRNA.
PubMed ID:	32894761 NCBI(pubmed)
PubMed ID:	24962214 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:28022426..28022490 (- strand)
Length:	65
Type:	three_prime_UTR

Position:	Chr01:28022491..28022793 (- strand)
Length:	303
Type:	CDS

Position:	Chr01:28025579..28026370 (- strand)
Length:	792
Type:	CDS

Position:	Chr01:28026371..28026626 (- strand)
Length:	256
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G214300.01
TCATTATCAT ACATTCACAC CTAACCCAAA TCCACCAACC TTTGTAAACT GACGAAACTT ATATGGCCGA CCATGACCAC
AAGATTCCCA CCACTGCCAC GAATTAATTC CACATCACAA AGGACACGAC CATTAGAAAA TCTTAGCGTT TGTTTTGTAG
CTGGATTTAA ACATATATAA GATGAACTAC TACTACGTAT ACATCGAAAA GCATAAACCG AACAAGTAGT AAAGTACGTT
CAAAACAAAA ACAAAAATGG GTTTCTGTAG CAATGGCAGA GAAGAGAGTG AAATATATCA CGCTCAAATC CACCTGTACA
AACACGTGTA CAACTTCGTG AGCTCTATGG CTCTCAAGTG TGCCATGGAA CTAGGAATAG CGGACGCAAT CCACGGCCAC
GGAGAACCCA TGAGCATTTC TGAGTTAGCC TCTGCACTGA AACTGCACCC TTCAAAACTC TCTGTCCTCC ACCGATTCAT
GCGCCTTCTA ACACATAATG GGTTCTTCGC CAAAACAACA GTGGCGTCAC ATGAAGGAGC AGGAGGAGAA GAAACAGTGT
ATGATCTCAC CCCTCCTTCC AAGCTTCTGA TCCGAAGCAA GTCAACGTGT TTGGCTCCTA TTGTTAAGGG CGCGCTTCAT
TCGAGTTCCA TCGATATGTG GCACTCCTCC AACAAGTGGT TCACTGAGGA TAAGGAACTC TCACTGTATG AGAGTGCCAA
CGGTGAGAGT TTCTGGGAGT TTTTGAACAA AACCACTGAA TCTGATACGC TTAACATGTT TCATGAAGCC ATGGCAGCAG
ATTCTAGAAT GTTCAAGATG GCTCTGGAAG AGTGCAAGCA TGTGTTTGAG GGATTGGGTT CCCTTGTCGA TGTGGGAGGT
GGAACTGGTG CTGTCACGAG TCTCATCAAT GAACTCTTCC CTCACATGAA GTGCACGGTG TTTGATCAAC CACAGGTTGT
GTCCAACTTG ACTGGATCTG AAAATTTGAA CTTTGTTGGT GGGGATATGT TCAAATCCAT CCCTTCAGCT GATGCTGTTT
TACTCAAGTG GGTTCTGCAT GATTGGAACG ACGAGCTCGC AGTGAAGATA TTGAAGAACT GCAAAGACGC TATTTCAGGG
AAAGGGAAAG AAGGAAAAGT GATAATCGTA GACATAGCAA TTGATGAAGC AAGTGATGAT AGTGAATTGA CAGAGTTGAA
GCTGAACTAT GACTTGGTGA TGCTCACTAT GTTGAATGGA AAAGAAAGAG ATAGAAATGA ATGGGAAAAA CTTATTTACG
ATGCAGGCTT CAGCGGCTAC GACATCACCC CTATATGTGG CTTCAAATCT CTCATCCAAC TTTATCCTTA ATAACATATT
TCAAGCTGTT GCAAACAATG AGTCATATGA TTCCAAAGTG TTGCACCATA TATATG

[show][hide][copy]CDS

>Vigan.01G214300.01
ATGGGTTTCT GTAGCAATGG CAGAGAAGAG AGTGAAATAT ATCACGCTCA AATCCACCTG TACAAACACG TGTACAACTT
CGTGAGCTCT ATGGCTCTCA AGTGTGCCAT GGAACTAGGA ATAGCGGACG CAATCCACGG CCACGGAGAA CCCATGAGCA
TTTCTGAGTT AGCCTCTGCA CTGAAACTGC ACCCTTCAAA ACTCTCTGTC CTCCACCGAT TCATGCGCCT TCTAACACAT
AATGGGTTCT TCGCCAAAAC AACAGTGGCG TCACATGAAG GAGCAGGAGG AGAAGAAACA GTGTATGATC TCACCCCTCC
TTCCAAGCTT CTGATCCGAA GCAAGTCAAC GTGTTTGGCT CCTATTGTTA AGGGCGCGCT TCATTCGAGT TCCATCGATA
TGTGGCACTC CTCCAACAAG TGGTTCACTG AGGATAAGGA ACTCTCACTG TATGAGAGTG CCAACGGTGA GAGTTTCTGG
GAGTTTTTGA ACAAAACCAC TGAATCTGAT ACGCTTAACA TGTTTCATGA AGCCATGGCA GCAGATTCTA GAATGTTCAA
GATGGCTCTG GAAGAGTGCA AGCATGTGTT TGAGGGATTG GGTTCCCTTG TCGATGTGGG AGGTGGAACT GGTGCTGTCA
CGAGTCTCAT CAATGAACTC TTCCCTCACA TGAAGTGCAC GGTGTTTGAT CAACCACAGG TTGTGTCCAA CTTGACTGGA
TCTGAAAATT TGAACTTTGT TGGTGGGGAT ATGTTCAAAT CCATCCCTTC AGCTGATGCT GTTTTACTCA AGTGGGTTCT
GCATGATTGG AACGACGAGC TCGCAGTGAA GATATTGAAG AACTGCAAAG ACGCTATTTC AGGGAAAGGG AAAGAAGGAA
AAGTGATAAT CGTAGACATA GCAATTGATG AAGCAAGTGA TGATAGTGAA TTGACAGAGT TGAAGCTGAA CTATGACTTG
GTGATGCTCA CTATGTTGAA TGGAAAAGAA AGAGATAGAA ATGAATGGGA AAAACTTATT TACGATGCAG GCTTCAGCGG
CTACGACATC ACCCCTATAT GTGGCTTCAA ATCTCTCATC CAACTTTATC CTTAA

[show][hide][copy]PROTEIN

>Vigan.01G214300.01
MGFCSNGREE SEIYHAQIHL YKHVYNFVSS MALKCAMELG IADAIHGHGE PMSISELASA LKLHPSKLSV LHRFMRLLTH
NGFFAKTTVA SHEGAGGEET VYDLTPPSKL LIRSKSTCLA PIVKGALHSS SIDMWHSSNK WFTEDKELSL YESANGESFW
EFLNKTTESD TLNMFHEAMA ADSRMFKMAL EECKHVFEGL GSLVDVGGGT GAVTSLINEL FPHMKCTVFD QPQVVSNLTG
SENLNFVGGD MFKSIPSADA VLLKWVLHDW NDELAVKILK NCKDAISGKG KEGKVIIVDI AIDEASDDSE LTELKLNYDL
VMLTMLNGKE RDRNEWEKLI YDAGFSGYDI TPICGFKSLI QLYP*