VIGGS:GBrowse

Vigan.01G215800.01

Basic Information:

Name:	Vigan.01G215800.01 Multiple alignment Variant Information
Position:	Chr01:28312257..28320435 (+ strand)
Length:	8179

Functional Information:

Description:	Similar to Uncharacterized protein. [I1KMF4, Glycine max]
GO:	Biological Process: protein phosphorylation (GO:0006468)
	Biological Process: regulation of signal transduction (GO:0009966)
	Molecular Function: protein kinase activity (GO:0004672)
	Molecular Function: protein serine/threonine kinase activity (GO:0004674)
	Molecular Function: protein binding (GO:0005515)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro:	Protein kinase domain (IPR000719)
	Serine-threonine/tyrosine-protein kinase catalytic domain (IPR001245)
	Ankyrin repeat (IPR002110)
	Serine/threonine- / dual specificity protein kinase, catalytic domain (IPR002290)
	Serine/threonine-protein kinase, active site (IPR008271)
	Protein kinase-like domain (IPR011009)
	Integrin-linked protein kinase (IPR016253)
	Protein kinase, ATP binding site (IPR017441)
	Ankyrin repeat-containing domain (IPR020683)
	Serine/threonine-protein kinase CTR1/EDR1 (IPR028324)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:2.09,1.46,13.24,10.12,9.30,8.05,14.00,13.60
Arabidopsis thaliana homolog:	AT1G14000.1

Automatic updates:

Name:	PV400275 NCBI(nuccore)
Organism:	Medicago truncatula
Description:	Medicago truncatula VH1-interacting kinase (VIK) mRNA, complete cds.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:28312257..28312536 (+ strand)
Length:	280
Type:	five_prime_UTR

Position:	Chr01:28312537..28312803 (+ strand)
Length:	267
Type:	CDS

Position:	Chr01:28312916..28312990 (+ strand)
Length:	75
Type:	CDS

Position:	Chr01:28313087..28313203 (+ strand)
Length:	117
Type:	CDS

Position:	Chr01:28313832..28313926 (+ strand)
Length:	95
Type:	CDS

Position:	Chr01:28314296..28314416 (+ strand)
Length:	121
Type:	CDS

Position:	Chr01:28314513..28314592 (+ strand)
Length:	80
Type:	CDS

Position:	Chr01:28316765..28316824 (+ strand)
Length:	60
Type:	CDS

Position:	Chr01:28317421..28317542 (+ strand)
Length:	122
Type:	CDS

Position:	Chr01:28317627..28317712 (+ strand)
Length:	86
Type:	CDS

Position:	Chr01:28317796..28317911 (+ strand)
Length:	116
Type:	CDS

Position:	Chr01:28318841..28318967 (+ strand)
Length:	127
Type:	CDS

Position:	Chr01:28318968..28320435 (+ strand)
Length:	1468
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G215800.01
TAGAGCATGA GAATTCCATT TTCTCTTGTA ATAATTAAAA AAAATTATAT AATAATTGAT TGGTTGAAGT AGTATAATTA
TGTATGGAAG GTATTCAGTT GAAGCGGTTA AATGGTAATT ACGATGAAAA GTTAGGCCAC GCGGATTGGA AGAGGGTGAG
TTGACATTGA AAACATGGTT GAGTAAGGGA GCAACCAAAC CAAAGGAAAC GCAAAAGAGA GGAAGTAGAA GAAGATAATA
TAATTAGGCG AGTGTTGAAG AAAGGGTTAA GTTTGAAGCG ATGAGTTCGG GAAGCCATAG TGATAAGGAG AAGGAGAAGG
AGAAGCAGAG GGTGAGCCGG ACGTCGTTGA TACTGTGGCA TGCTCACCAA AACGACGCCG CAGCGGTGCG GAAGCTCCTG
CAGGAGGATC CTTCGCTGGT GACGGCAAGG GATTACGACA ACCGCACCCC GCTCCACGTC GCATCTCTCC ACGGCTGGAT
CGACGTCGCT AAGTGTTTGA TCGAGTTCGG CGCCGATGTC AACGCGCAAG ATCGTTGGAA AAACACCCCT CTGGCGGATG
CGGAAGGAGC TAAGAAGACT GATGTGATCG AGCTTTTGCA ATCTCATGGA GGCTCTTCTT ATGGGCAAAC TGGTAGCCAT
TTTGAACCGA AGCCTGTTCC GCCGCCGTTG CCGAATAAGT GTGACTGGGA AATCGAACCT ACCGAGCTTG ACTTCTCCAC
CTCCACGAGA ATTGGAAAGG GGTCTTTTGG TGAGATTTTA AAAGCCCATT GGCGTGGAAC ACCAGTTGCT GTTAAACGTA
TTCTTCCATC TCTTTCAGAA GACAGATTGG TGATTCAGGA CTTCAGGCAT GAGGTCAATT TGTTAGTGAA ACTTCGACAC
CCCAATATAG TTCAGTTTCT TGGAGCTGTC ACTGACAGGA AGCCCCTTAT GTTAATTACT GAGTATCTGA GAGGGGGTGA
TCTTCATCAG TACCTCAAGG ATAAAGGTAC ACTTAGTCCA GCAACAGCTA TCAACTTTTC CATGGATATT GTGAGAGGAA
TGGCCTATCT TCACAATGAA CCAAATGTTA TAATTCATCG GGACCTAAAG CCAAGGAATG TTCTTTTAGT CAATACTAGT
GCCGACCATT TAAAAGTTGG AGATTTTGGA TTGAGTAAGC TTATCACTAT CCAGAGTTCT CATGATGTAT ACAAGATGAC
CGGTGAAACT GGGAGCTACC GCTATATGGC TCCTGAAGTG TTCAAACATC GGAGATATGA TAAGAAGGTT GATGTGTACT
CCTTTGCAAT GATTTTGTAT GAGATGCTTG AAGGTGAACC ACCTTTTGCA AATCTCGAGC CTTATGATGG AGCAAAACGT
GCTGCTGAGG GTCAAAGGCC TTCATTTCGG TCAAAGGGTT ATATCAATGA ATTGCAAGAA TTAACGGAAC AGTGTTGGGC
TCATGACGTG AATCAGAGAC CACCCTTCAT AGAGATCCTT AAACGTCTTG AAAAGATCAA GGAGAATTTA CATTCAGATC
ATCACTGGCA TTTGTTTGCA TCATAAATGT CTAATAGCAT TAATTTGTTC AGAAATTCAG ATTATTTATT TATCACTACC
ATCTGGTTTG CTGCGGCATT TATGGAGTGA TTGGGCCAAC TGGAAATCCT GCAAAGTCAA TACTTGTTTT CAACTGTTTG
GATTAATGAG CAGAACAGGT GATTTTAATT GCCTGCCTTT GGTTTCTAGT ATTTTTATCT CATTTAAGCT CTCGTCTCTT
TCAAGTGAGA GCGCATGCAA TTTGTTGCCT ATGTGTAAAG CGTTTCAAGT GTACAAACAA ATTGAGCAAG TAGGTCACTT
CATGCAATCC GTTGTTTTAT GTTTCATCTT TCGTTTAAAA AGATAGTGAT AGTTTCCTTT GGTATTAAAT GCTACCAACT
TTTTTGGGAT TGCAATTCTG GTAGCAGTTT CTTATTGGTG GTTTTCACGT GAATTCAAGT GGGGGAAAAC TGTTATTTTG
AGTTGTAGAT GTGAAGACCG TCAGGAGTAA ATAGCTGCAA CCTCCAATCG TACTTCCTGC CTAAAACCTT TTCTTCTTTT
TCTTTTTGCA CAAAGGTATT TTATTTACAG TAAAAAGTTA ATTCCTTCCA TAGTTTAAAT ATTACCTACC GATTGACCTT
TAATCTTTCA TATTAAAGTC TTATCTACAT ACAATTTAAA ATTAAACTGT AAGCAATATG TTTTTTTTTT CCTGCAATGA
TACATAATAT ATTATATATA GGGTACAAGG TAGACCTCCC TTTTACGTTT AACTTAAACT GAACAATCAA AGAATTTTGT
TTCCTACATA GTTCCTTAGT TCACAGACGC GGTCAAAACC CCAAACATAG AGAACCTAGT GACCTAACAA CTACAAAATA
CAAGATCCTA TTTTCAAACT TTCACATAGC CAACTCATTA GTAAAACAAG TTTCTTATAC ATGTTTCAGG GTTGGCACAC
CATTGGATAA ACGTTGGACA TCTCTCCTTA TCAGTCAGTT TATACCACTT TCAATATACA TCTTGATGCG TTGCATCACA
TCCTGTCCGC AAAACAGTTT CCGTTCCATC AAACACCTAT TTCCCTCTTT CCATATACAC CAGATAATTG CAAACTACAA
TCTAAACCAT AGTTCTTTAT TGAATACACA CTGCCTCTAT TTATGCTGAT AGAAACGTGT TTCTGCTAAC TCAGGGAAAA
CACTATTAAT TCTCACTCAT CAATTGCAAT TTTCATACCC AATCAAACAT CCTGCAATTG AACAGAAGTA TGTATATGGG
AGACAAGCAA CTCTCTTCTC CTATTAAACT CCCCATCCAT ATTCCTTCCT CCCACTTTCC TATCTAACAG TATTCAATTT
CTGTTATGAT ATTATGAATA ATATATTAAA CTTAGTAGAC AATGGCCTCT GTTGTTGTTC CATCCAGATG TCTGAACCTT
ACTTCATTTT TGTTACCAAG ATTCCTTTTA GTTTTCTCAT TAAACCATCC ATTT

[show][hide][copy]CDS

>Vigan.01G215800.01
ATGAGTTCGG GAAGCCATAG TGATAAGGAG AAGGAGAAGG AGAAGCAGAG GGTGAGCCGG ACGTCGTTGA TACTGTGGCA
TGCTCACCAA AACGACGCCG CAGCGGTGCG GAAGCTCCTG CAGGAGGATC CTTCGCTGGT GACGGCAAGG GATTACGACA
ACCGCACCCC GCTCCACGTC GCATCTCTCC ACGGCTGGAT CGACGTCGCT AAGTGTTTGA TCGAGTTCGG CGCCGATGTC
AACGCGCAAG ATCGTTGGAA AAACACCCCT CTGGCGGATG CGGAAGGAGC TAAGAAGACT GATGTGATCG AGCTTTTGCA
ATCTCATGGA GGCTCTTCTT ATGGGCAAAC TGGTAGCCAT TTTGAACCGA AGCCTGTTCC GCCGCCGTTG CCGAATAAGT
GTGACTGGGA AATCGAACCT ACCGAGCTTG ACTTCTCCAC CTCCACGAGA ATTGGAAAGG GGTCTTTTGG TGAGATTTTA
AAAGCCCATT GGCGTGGAAC ACCAGTTGCT GTTAAACGTA TTCTTCCATC TCTTTCAGAA GACAGATTGG TGATTCAGGA
CTTCAGGCAT GAGGTCAATT TGTTAGTGAA ACTTCGACAC CCCAATATAG TTCAGTTTCT TGGAGCTGTC ACTGACAGGA
AGCCCCTTAT GTTAATTACT GAGTATCTGA GAGGGGGTGA TCTTCATCAG TACCTCAAGG ATAAAGGTAC ACTTAGTCCA
GCAACAGCTA TCAACTTTTC CATGGATATT GTGAGAGGAA TGGCCTATCT TCACAATGAA CCAAATGTTA TAATTCATCG
GGACCTAAAG CCAAGGAATG TTCTTTTAGT CAATACTAGT GCCGACCATT TAAAAGTTGG AGATTTTGGA TTGAGTAAGC
TTATCACTAT CCAGAGTTCT CATGATGTAT ACAAGATGAC CGGTGAAACT GGGAGCTACC GCTATATGGC TCCTGAAGTG
TTCAAACATC GGAGATATGA TAAGAAGGTT GATGTGTACT CCTTTGCAAT GATTTTGTAT GAGATGCTTG AAGGTGAACC
ACCTTTTGCA AATCTCGAGC CTTATGATGG AGCAAAACGT GCTGCTGAGG GTCAAAGGCC TTCATTTCGG TCAAAGGGTT
ATATCAATGA ATTGCAAGAA TTAACGGAAC AGTGTTGGGC TCATGACGTG AATCAGAGAC CACCCTTCAT AGAGATCCTT
AAACGTCTTG AAAAGATCAA GGAGAATTTA CATTCAGATC ATCACTGGCA TTTGTTTGCA TCATAA

[show][hide][copy]PROTEIN

>Vigan.01G215800.01
MSSGSHSDKE KEKEKQRVSR TSLILWHAHQ NDAAAVRKLL QEDPSLVTAR DYDNRTPLHV ASLHGWIDVA KCLIEFGADV
NAQDRWKNTP LADAEGAKKT DVIELLQSHG GSSYGQTGSH FEPKPVPPPL PNKCDWEIEP TELDFSTSTR IGKGSFGEIL
KAHWRGTPVA VKRILPSLSE DRLVIQDFRH EVNLLVKLRH PNIVQFLGAV TDRKPLMLIT EYLRGGDLHQ YLKDKGTLSP
ATAINFSMDI VRGMAYLHNE PNVIIHRDLK PRNVLLVNTS ADHLKVGDFG LSKLITIQSS HDVYKMTGET GSYRYMAPEV
FKHRRYDKKV DVYSFAMILY EMLEGEPPFA NLEPYDGAKR AAEGQRPSFR SKGYINELQE LTEQCWAHDV NQRPPFIEIL
KRLEKIKENL HSDHHWHLFA S*