GBrowse Details

Vigan.01G215900.01

Basic Information:
Name: Vigan.01G215900.01
Multiple alignment
Variant Information
Position: Chr01:28321187..28323741 (- strand)
Length: 2555
Functional Information:
Description: Similar to transmembrane emp24 domain-containing protein p24delta9-like isoform X2. [XP_004516569.1, Cicer arietinum]
GO: Biological Process: transport (GO:0006810)
Cellular Component: integral to membrane (GO:0016021)
InterPro: GOLD (IPR009038)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:29.77,42.09,45.03,30.76,85.43,130.49,82.15,32.10
Arabidopsis thaliana homolog: AT1G26690.1
Automatic updates:
Name: NM_001250194 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499866 (LOC100499866), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:28321187..28321586 (- strand)
Length: 400
Type: three_prime_UTR
Position: Chr01:28321587..28321731 (- strand)
Length: 145
Type: CDS
Position: Chr01:28321876..28321952 (- strand)
Length: 77
Type: CDS
Position: Chr01:28322957..28323166 (- strand)
Length: 210
Type: CDS
Position: Chr01:28323286..28323513 (- strand)
Length: 228
Type: CDS
Position: Chr01:28323514..28323741 (- strand)
Length: 228
Type: five_prime_UTR


>Vigan.01G215900.01
GTTTGACAAT CGACATGGAC ATCGTGGTTG TGTTGTGCAG CTGCAACAGT AGGTGTAGTA GTTAGCACCC TGTTTGGTTT
GGTTAATAGT TCAATTACCA TATTAATTAT TTCTCATCCA TCGCTGCTAA ATCTCTTTTG ATTCTTCTTC TCCACCTTCA
CTTCACGCCC ATAACCTAAT CTCTGCTAAC CCACTTTTCT CTGTCGCCAA ACACACCATC CATTCATCAT GTTCATCATG
ATTGGGGGAA ACCCCAGACC CCTTTTGCTC CTTTCGCTTC TGCTTTTGGT GTTCTTTTCT TCCTCAACCC AATCTCTTCG
ATTCGAACTC CAATCTGGCC ACACCAAATG CATATCCGAA GACATCAAGA GCAATTCCAT GACGGTCGGC AAGTACCTTA
TCGTCAATCA CAACGAGGGT CAACCTCTGC CCGATTCCCA CAGAGTCACC GTTCGGGTGA CTTCGTCGTA CGGGAACAAC
TATCACTACG GGGATCGCGT TCAGACGGGG CAGTTTGCGT TCGCGGCAGC GGAGGCTGGA GATTACATGT CTTGTTTTTG
GGCGATAGAT CACAATCCCC CGATAACGTT GACTGTGGAT TTTGATTGGA AAACCGGTGT AGCAGCCAAG GATTGGTCTA
ATGTTGCTAA AAAGGGGCAA ATTGATGTAA TGGAGCTAGA GCTAAGGAAG CTGCAAGATT CTGTTGCTTC CATTCATGAC
GAGATGTTTT ATCTTCGTGA AAGAGAAGAA GAAATGCAGG AACTGAACAG GGCAACCAAT AGCAGAATGT TCTGGCTGAG
TTTGCTTTCG CTCTTTGTCT GCTTATCAGT AGCAGGGATG CAACTATGGC ACCTGAAGAC ATTCTTCGAG AAAAAGAAAC
TCATTTGAAA TTTTGTGATA GTTTACATTT TTCCTATGTG ATCTTGTAAA ATATTCCAGC ATTAATTTAT CCAGAGGATA
CGCATAACGG TAGTCAGTAT GATCTCAAAA ATCACAAGTA TATTCCTTTG TTAAACGCAT ATCAGGCTTA TGGCAATACG
ATTTTCAAAG GAAATTTTGG CGTTCTTCAA TCCAAGTGGC TCTTTATTAT GTTTTACAAC AAGCCTTTAG CAAACATCTC
GGTCCGTTTG GTAGAGAGGA GAAAGTTAGA GTACATGAGA ATTGGAAAAA TGTGAAGGAA ATAGGTGAGA AAGAAAATAC
AAAACAGTTG AATTTGATTT AAGAGAAACA TAGAAGAAGA AAAAAGTAAA AGATACTAAA ATGTGACAAA TGGAGGGGAA
AATTTAAG

>Vigan.01G215900.01
ATGTTCATCA TGATTGGGGG AAACCCCAGA CCCCTTTTGC TCCTTTCGCT TCTGCTTTTG GTGTTCTTTT CTTCCTCAAC
CCAATCTCTT CGATTCGAAC TCCAATCTGG CCACACCAAA TGCATATCCG AAGACATCAA GAGCAATTCC ATGACGGTCG
GCAAGTACCT TATCGTCAAT CACAACGAGG GTCAACCTCT GCCCGATTCC CACAGAGTCA CCGTTCGGGT GACTTCGTCG
TACGGGAACA ACTATCACTA CGGGGATCGC GTTCAGACGG GGCAGTTTGC GTTCGCGGCA GCGGAGGCTG GAGATTACAT
GTCTTGTTTT TGGGCGATAG ATCACAATCC CCCGATAACG TTGACTGTGG ATTTTGATTG GAAAACCGGT GTAGCAGCCA
AGGATTGGTC TAATGTTGCT AAAAAGGGGC AAATTGATGT AATGGAGCTA GAGCTAAGGA AGCTGCAAGA TTCTGTTGCT
TCCATTCATG ACGAGATGTT TTATCTTCGT GAAAGAGAAG AAGAAATGCA GGAACTGAAC AGGGCAACCA ATAGCAGAAT
GTTCTGGCTG AGTTTGCTTT CGCTCTTTGT CTGCTTATCA GTAGCAGGGA TGCAACTATG GCACCTGAAG ACATTCTTCG
AGAAAAAGAA ACTCATTTGA 

>Vigan.01G215900.01
MFIMIGGNPR PLLLLSLLLL VFFSSSTQSL RFELQSGHTK CISEDIKSNS MTVGKYLIVN HNEGQPLPDS HRVTVRVTSS
YGNNYHYGDR VQTGQFAFAA AEAGDYMSCF WAIDHNPPIT LTVDFDWKTG VAAKDWSNVA KKGQIDVMEL ELRKLQDSVA
SIHDEMFYLR EREEEMQELN RATNSRMFWL SLLSLFVCLS VAGMQLWHLK TFFEKKKLI*