GBrowse Details

Vigan.01G217400.01

Basic Information:
Name: Vigan.01G217400.01
Multiple alignment
Variant Information
Position: Chr01:28534704..28536414 (+ strand)
Length: 1711
Functional Information:
Description: Similar to NAC transcription factor 29. [XP_003556789.1, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
InterPro: NAC domain (IPR003441)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.07,0.78,26.60,9.19,2.81,5.53,1.60,2.05
Automatic updates:
Name: NM_001248986 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription factor NAC51 (NAC51), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:28534704..28535060 (+ strand)
Length: 357
Type: five_prime_UTR
Position: Chr01:28535061..28535226 (+ strand)
Length: 166
Type: CDS
Position: Chr01:28535342..28535622 (+ strand)
Length: 281
Type: CDS
Position: Chr01:28535736..28536059 (+ strand)
Length: 324
Type: CDS
Position: Chr01:28536060..28536414 (+ strand)
Length: 355
Type: three_prime_UTR


>Vigan.01G217400.01
TAAGTGGGAA TAAAAAAGCA GCAATTGGCA ATAACATTCT AATGGAGAAA TGAGAATTGA ATATTACTTG ATAAGGATAT
AGACGTCCTT GCACTGGTTC TTTGAACCAT GTGCAAAAGT CAGTAACAGA TATACATGTG AAATAGTTCT GACCCCTCAT
TGGTGCATGC ATGCCTGTGA CGCATGTACT AGGAATAGTA AATTTATCCC ATCACCCAAT CACTAGCATG CAAGGAAACC
CACCCTCAAA GATAAAACCA CCACCAATCT CCTTTCAAAC ACCTTCATTT CTCTGCAAAC CCTTCACTTC ATAACTCCCT
TTTTCTTCTC CCGAACCAAG TTCATATTTT TCACTCCATG GATGCTACCA CAAGCTCTGA ACTTCCCCCT GGCTTTAGGT
TTCACCCAAC GGACGAGGAA CTAATCGTGT ATTACCTCTG CAACCAAGCC ACATCAAAGC CCTGCCCTGC TTCTATCATC
CCAGAAGTCG ATCTCTACAA GTTTGATCCA TGGGAATTGC CAGATAAAAC AGAGTTTGGA GAAAATGAAT GGTATTTCTT
TAGTCCACGA GACAGAAAGT ACCCAAACGG TGTGAGGCCG AACAGAGCAA CAGTGTCTGG GTATTGGAAG GCCACTGGCA
CAGACAAGGC AATCTATAGT GGATCTAAGC TTGTGGGGGT GAAGAAATCC TTAGTATTTT ATAAGGGTAG GCCACCAAAG
GGTGACAAGA CTGATTGGAT TATGCATGAA TACCGATTGG CGGAATCAAA ACAATCGGTT AACAGGAAAA TTGGGTCCAT
GAGGCTGGAT GACTGGGTCC TGTGCAGGAT TTATAAGAAG AAGAACATCG GAAAAACAGA GCACAAGGAG ACGCACCCAA
AAGTTCAAAT GACTGATCTT ATAGCTGAAA ACAATGATGA GCAGAAAATG ATGATGAACC TTCCCAGGAC TTGGTCCCTC
ACTTACCTTT TGGATATGAA TTACTTGGGT CCAATTTTAT CTGATGGCCC CTATTGCTCA ACCTTTGATT TTCAAATGAG
CAATGCCAAT ATTGGAATTG ACCCCTTAGT AAAATCTCAA CCGGTTGAAA TGGCGAACAA TTATGTAGCA GACTCAGGGA
AATACTGAGT GAAACAGAGT AGCAACATTG ACCACAAGTA TGTGTGAAGC AGATGAAAGA TCTAGTAGGA TAGGAAAAAA
CAAAAACAGA GTTAGATTGT TGTCTAGTCA TGACGATAAG CTTCGTCCAT AAAATAATCA TGAAGACTCT ATGTGCCAAG
TATGGCAAAT ATGTTATGTC AAAAAATGTA TTTTCAATGT GTTATTGACA CTTATTGTAT AGAAGGAGAA GTTAGACGCC
TCTTAATTAA GGTTGATACA TGATTAGTTA CATTCCTTAT CTTGATTCGG TCAAGCCACA TGCTTTGATC ATGCCTCGGA
AGCATGTGAA TCTAGATATG GTCGCTCACT TTTTGTAAAC AAT

>Vigan.01G217400.01
ATGGATGCTA CCACAAGCTC TGAACTTCCC CCTGGCTTTA GGTTTCACCC AACGGACGAG GAACTAATCG TGTATTACCT
CTGCAACCAA GCCACATCAA AGCCCTGCCC TGCTTCTATC ATCCCAGAAG TCGATCTCTA CAAGTTTGAT CCATGGGAAT
TGCCAGATAA AACAGAGTTT GGAGAAAATG AATGGTATTT CTTTAGTCCA CGAGACAGAA AGTACCCAAA CGGTGTGAGG
CCGAACAGAG CAACAGTGTC TGGGTATTGG AAGGCCACTG GCACAGACAA GGCAATCTAT AGTGGATCTA AGCTTGTGGG
GGTGAAGAAA TCCTTAGTAT TTTATAAGGG TAGGCCACCA AAGGGTGACA AGACTGATTG GATTATGCAT GAATACCGAT
TGGCGGAATC AAAACAATCG GTTAACAGGA AAATTGGGTC CATGAGGCTG GATGACTGGG TCCTGTGCAG GATTTATAAG
AAGAAGAACA TCGGAAAAAC AGAGCACAAG GAGACGCACC CAAAAGTTCA AATGACTGAT CTTATAGCTG AAAACAATGA
TGAGCAGAAA ATGATGATGA ACCTTCCCAG GACTTGGTCC CTCACTTACC TTTTGGATAT GAATTACTTG GGTCCAATTT
TATCTGATGG CCCCTATTGC TCAACCTTTG ATTTTCAAAT GAGCAATGCC AATATTGGAA TTGACCCCTT AGTAAAATCT
CAACCGGTTG AAATGGCGAA CAATTATGTA GCAGACTCAG GGAAATACTG A

>Vigan.01G217400.01
MDATTSSELP PGFRFHPTDE ELIVYYLCNQ ATSKPCPASI IPEVDLYKFD PWELPDKTEF GENEWYFFSP RDRKYPNGVR
PNRATVSGYW KATGTDKAIY SGSKLVGVKK SLVFYKGRPP KGDKTDWIMH EYRLAESKQS VNRKIGSMRL DDWVLCRIYK
KKNIGKTEHK ETHPKVQMTD LIAENNDEQK MMMNLPRTWS LTYLLDMNYL GPILSDGPYC STFDFQMSNA NIGIDPLVKS
QPVEMANNYV ADSGKY*