GBrowse Details

Vigan.01G217700.01

Basic Information:
Name: Vigan.01G217700.01
Multiple alignment
Variant Information
Position: Chr01:28612757..28614590 (+ strand)
Length: 1834
Functional Information:
Description: Similar to Uncharacterized protein. [I1KMG7, Glycine max]
GO: Biological Process: plant-type cell wall organization (GO:0009664)
Cellular Component: extracellular region (GO:0005576)
InterPro: Expansin (IPR002963)
Expansin/pollen allergen, DPBB domain (IPR007112)
Expansin, cellulose-binding-like domain (IPR007117)
Expansin/Lol pI (IPR007118)
RlpA-like double-psi beta-barrel domain (IPR009009)
Barwin-like endoglucanase (IPR014733)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.40,2.01,74.85,9.14,63.28,26.42,65.47,39.45
Arabidopsis thaliana homolog: AT2G03090.1
Automatic updates:
Name: NM_001251124 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527059 (LOC100527059), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001279104 NCBI(nuccore)
Organism: Cicer arietinum
Description: Cicer arietinum alpha-expansin 4 (CA-EXPA4), mRNA.
PubMed ID: 17110120 NCBI(pubmed)
15474376 NCBI(pubmed)
Status: Known Variant
Name: NM_001279187 NCBI(nuccore)
Organism: Cicer arietinum
Description: Cicer arietinum alpha-expansin 3 (CA-EXPA3), mRNA.
PubMed ID: 17110120 NCBI(pubmed)
15474376 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:28612757..28612903 (+ strand)
Length: 147
Type: five_prime_UTR
Position: Chr01:28612904..28613066 (+ strand)
Length: 163
Type: CDS
Position: Chr01:28613197..28613509 (+ strand)
Length: 313
Type: CDS
Position: Chr01:28613727..28614033 (+ strand)
Length: 307
Type: CDS
Position: Chr01:28614034..28614590 (+ strand)
Length: 557
Type: three_prime_UTR


>Vigan.01G217700.01
CAACACTCCT TCTCTCCACA CTTCCTGCTG CTCCTTTCTT TGTCCCCTCA CTATCGAAGT AATTGCCCTT TTCGTTTGTA
CCTAAATTTG TTGTTCCATC TTTGGAGGCT GAAGAAACAC TTCTTCGGCT AGACAGGTGA TGTTTGCATG AGTTGTCTGA
TTGTTTTGTT TTGTTGCCTG TCCAGGAAAA TGGCTCTTGT TATCTTGATG GGTTTTCTCA CAATGCTCTC CTCTGCTCAT
GCTTATGATG GAGGGTGGAC TAGTGCTCAT GCCACTTTCT ATGGAGGGAG TGATGCATCA GGGACAATGG GTGGAGCATG
TGGGTATGGA AACCTCTACA GCCAAGGCTA TGGAACAAAC ACTGCTGCTT TGAGCACTGC GCTGTTCAAC AATGGGTTAA
GCTGTGGCTC TTGCTTTGAG ATTAGGTGTG CAAATGACCA CAAGTGGTGC CTTCCTGGAT CGATTTTGGT CACTGCCACC
AATTTCTGTC CACCAAACAA TGCCTTACCA AACAATGCTG GTGGCTGGTG TAACCCTCCT CTTCAACACT TTGATCTCGC
TCAGCCCGTC TTCCTACGCA TTGCTCAATA CCGCGCTGGA ATTGTGCCTG TGTCCTACAG AAGGGTGCCC TGCAGGAGAA
AGGGAGGGAT CAGATTCACC ATTAATGGAC ATTCTTACTT CAACCTAGTC CTCATCACAA ACGTGGGCGG TGCTGGAGAT
GTGCATGGTG TGGCCGTCAA AGGTTCAAGA ACTGGTTGGA TGCCAATGTC AAGGAACTGG GGTCAGAACT GGCAGAGCAA
CAACTATCTG AATGGTCAAA GCCTCTCCTT CAAGGTTACC ACAAGCGATG GCCGAACTGT GGTGTCGAAC AACGTTGCAC
CAGCTGGTTG GTCCTTTGGA CAAACATACA CCGGTGCTCA ATTCCGCTAG ATCTACCTTG TCGAAGATCA GTCACATGAA
TACAATTACT ATATAGTATA TATATAGTAT GGTCTAAGAG TATGGCTCTT TAGTATACTA GGGTATTAGA TAGTATGCTA
CCAATTAAGG GGTCATATTT TGGAATTTTA AGTCTAGGCA GGGGAAGAAG GGCATGTTTT AAATTGCTCC TTCATTTTAA
TTTCTGTGTC TGCTGGTGGG GACCTGTTTT TTTGGCTCCT CTTTATTACA GGGGTGGTTT TCTTTTTCAC TTTTTTTAAA
GGTTTTTAAA GCCTCTGTGG CTGAATAGAA GCTAGGGGAG GTGGACTTTT AATTTTGTAA TGTATGGGTG AACAACTTAA
TTGGAAGAGG TGGACTCTGA CCACCCGCCA ATTAGTATTG AAACAGAGTC TTTTTCATCT TGTTGGGAGT GTTTACTACT
CATCCTTTTG TAACCGGACT TGGTTGTGTT TCAGACTCAA AAAACCAAGT TTCAGTAATG TTTTAGTAAT TTCTATTGCT
ATGTTTCTAT TTCTTTACTT TCATTTCATA GTTGCTTTAT TGGAAAA

>Vigan.01G217700.01
ATGAGTTGTC TGATTGTTTT GTTTTGTTGC CTGTCCAGGA AAATGGCTCT TGTTATCTTG ATGGGTTTTC TCACAATGCT
CTCCTCTGCT CATGCTTATG ATGGAGGGTG GACTAGTGCT CATGCCACTT TCTATGGAGG GAGTGATGCA TCAGGGACAA
TGGGTGGAGC ATGTGGGTAT GGAAACCTCT ACAGCCAAGG CTATGGAACA AACACTGCTG CTTTGAGCAC TGCGCTGTTC
AACAATGGGT TAAGCTGTGG CTCTTGCTTT GAGATTAGGT GTGCAAATGA CCACAAGTGG TGCCTTCCTG GATCGATTTT
GGTCACTGCC ACCAATTTCT GTCCACCAAA CAATGCCTTA CCAAACAATG CTGGTGGCTG GTGTAACCCT CCTCTTCAAC
ACTTTGATCT CGCTCAGCCC GTCTTCCTAC GCATTGCTCA ATACCGCGCT GGAATTGTGC CTGTGTCCTA CAGAAGGGTG
CCCTGCAGGA GAAAGGGAGG GATCAGATTC ACCATTAATG GACATTCTTA CTTCAACCTA GTCCTCATCA CAAACGTGGG
CGGTGCTGGA GATGTGCATG GTGTGGCCGT CAAAGGTTCA AGAACTGGTT GGATGCCAAT GTCAAGGAAC TGGGGTCAGA
ACTGGCAGAG CAACAACTAT CTGAATGGTC AAAGCCTCTC CTTCAAGGTT ACCACAAGCG ATGGCCGAAC TGTGGTGTCG
AACAACGTTG CACCAGCTGG TTGGTCCTTT GGACAAACAT ACACCGGTGC TCAATTCCGC TAG

>Vigan.01G217700.01
MSCLIVLFCC LSRKMALVIL MGFLTMLSSA HAYDGGWTSA HATFYGGSDA SGTMGGACGY GNLYSQGYGT NTAALSTALF
NNGLSCGSCF EIRCANDHKW CLPGSILVTA TNFCPPNNAL PNNAGGWCNP PLQHFDLAQP VFLRIAQYRA GIVPVSYRRV
PCRRKGGIRF TINGHSYFNL VLITNVGGAG DVHGVAVKGS RTGWMPMSRN WGQNWQSNNY LNGQSLSFKV TTSDGRTVVS
NNVAPAGWSF GQTYTGAQFR *