GBrowse Details

Vigan.01G222300.01

Basic Information:
Name: Vigan.01G222300.01
Multiple alignment
Variant Information
Position: Chr01:29397105..29399508 (+ strand)
Length: 2404
Functional Information:
Description: Similar to Uncharacterized protein. [I1JE29, Glycine max]
InterPro: TB2/DP1/HVA22-related protein (IPR004345)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.14,0.72,7.01,0.76,9.44,5.43,21.85,11.55
Automatic updates:
Name: NM_001249194 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max HVA22-like protein (LOC100306512), mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:29397105..29397291 (+ strand)
Length: 187
Type: five_prime_UTR
Position: Chr01:29397292..29397359 (+ strand)
Length: 68
Type: CDS
Position: Chr01:29397479..29397505 (+ strand)
Length: 27
Type: CDS
Position: Chr01:29397606..29397728 (+ strand)
Length: 123
Type: CDS
Position: Chr01:29398283..29398541 (+ strand)
Length: 259
Type: CDS
Position: Chr01:29399315..29399383 (+ strand)
Length: 69
Type: CDS
Position: Chr01:29399384..29399508 (+ strand)
Length: 125
Type: three_prime_UTR


>Vigan.01G222300.01
GTTCTTTTCA AAGACTACTT TGGCTGTTTG CCAACTTTCC CGCATTTTCT TTCTTACTTT TTTCACTCTT TTCCAAACCC
CTTTTCTCTC ACCTTCTTCT TCCCTCTTCA CTTTCTCGCT TCAATTTCTC CACTTTCTCA CTTCCAAGTT GAAGCTGTAG
AAAACAAAAC AACTTTCATT GCAAAATATG GGTGCTTCGG ACAACAACAA CCACTTTCTT CAAGTTGTCT TCAATAACTT
CGACGTTCTT GCTCTACCCT TGGTTACGCT TGCTTACCCT TTATATGCTT CAATTAAGGC GATCGAGACC AAGTCTGCTG
CAGATGATCA GCAATGGCTC ACATATTGGA TTCTGTATTC CATTCTAACA CTCTTTGAGC TCACATTTGC AAAAGTTCTT
GAAGTGCTTC CCATTTGGCC CTTTGCCAAG TTGATATTCA GTTGTTGGTT GGTTCTGCCT CACTTCAATG GGGCTGCAGT
TGTTTACAGG AATTACATCA GACCATTCTA TATGAATCCA CAAATCCCAA TTCCACAAGG CTCACAAATG TGGTATTTTC
CCCAAAAGAA ATCCTTATTC AGTGAGTCAG ATGATGTTTT AAGTGCTGCT GAGAGATACA TGGAAGAGCA TGGTACAGAA
GCCTTTGAAA GACTTATAAA CAAGAATGAC AGACAGGCTA GGGCAAGGAG GAATGGAAAT TACATGATCT TTGATGACGA
CTATAGATAT TGAACTTTAT TTTTGTTTTC TTAAACTTTG TTAAGGCATC ATTGCTAATA TTTCATTTTA TCATATTTTG
TGATGTTTGA TGATGACCAT ATATATTGAA CTATGTTAAT GGCTCACTTG TTCTCCAA

>Vigan.01G222300.01
ATGGGTGCTT CGGACAACAA CAACCACTTT CTTCAAGTTG TCTTCAATAA CTTCGACGTT CTTGCTCTAC CCTTGGTTAC
GCTTGCTTAC CCTTTATATG CTTCAATTAA GGCGATCGAG ACCAAGTCTG CTGCAGATGA TCAGCAATGG CTCACATATT
GGATTCTGTA TTCCATTCTA ACACTCTTTG AGCTCACATT TGCAAAAGTT CTTGAAGTGC TTCCCATTTG GCCCTTTGCC
AAGTTGATAT TCAGTTGTTG GTTGGTTCTG CCTCACTTCA ATGGGGCTGC AGTTGTTTAC AGGAATTACA TCAGACCATT
CTATATGAAT CCACAAATCC CAATTCCACA AGGCTCACAA ATGTGGTATT TTCCCCAAAA GAAATCCTTA TTCAGTGAGT
CAGATGATGT TTTAAGTGCT GCTGAGAGAT ACATGGAAGA GCATGGTACA GAAGCCTTTG AAAGACTTAT AAACAAGAAT
GACAGACAGG CTAGGGCAAG GAGGAATGGA AATTACATGA TCTTTGATGA CGACTATAGA TATTGA

>Vigan.01G222300.01
MGASDNNNHF LQVVFNNFDV LALPLVTLAY PLYASIKAIE TKSAADDQQW LTYWILYSIL TLFELTFAKV LEVLPIWPFA
KLIFSCWLVL PHFNGAAVVY RNYIRPFYMN PQIPIPQGSQ MWYFPQKKSL FSESDDVLSA AERYMEEHGT EAFERLINKN
DRQARARRNG NYMIFDDDYR Y*