GBrowse Details

Vigan.01G223800.01

Basic Information:
Name: Vigan.01G223800.01
Multiple alignment
Variant Information
Position: Chr01:29706258..29711790 (+ strand)
Length: 5533
Functional Information:
Description: Similar to Uncharacterized protein. [I1KXR9, Glycine max]
InterPro: Major facilitator superfamily domain, general substrate transporter (IPR016196)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.04,4.66,8.55,3.80,13.05,7.03,11.74,8.94
Arabidopsis thaliana homolog: AT2G02860.1
Automatic updates:
Name: MN623097 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula isolate Medtr8g468330 sugar transporter mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:29706258..29706499 (+ strand)
Length: 242
Type: five_prime_UTR
Position: Chr01:29706500..29706760 (+ strand)
Length: 261
Type: CDS
Position: Chr01:29706912..29706977 (+ strand)
Length: 66
Type: CDS
Position: Chr01:29707349..29707447 (+ strand)
Length: 99
Type: CDS
Position: Chr01:29707534..29707598 (+ strand)
Length: 65
Type: CDS
Position: Chr01:29707712..29707796 (+ strand)
Length: 85
Type: CDS
Position: Chr01:29707910..29707943 (+ strand)
Length: 34
Type: CDS
Position: Chr01:29708085..29708184 (+ strand)
Length: 100
Type: CDS
Position: Chr01:29708523..29708598 (+ strand)
Length: 76
Type: CDS
Position: Chr01:29709047..29709406 (+ strand)
Length: 360
Type: CDS
Position: Chr01:29709545..29709688 (+ strand)
Length: 144
Type: CDS
Position: Chr01:29709859..29710092 (+ strand)
Length: 234
Type: CDS
Position: Chr01:29710249..29710312 (+ strand)
Length: 64
Type: CDS
Position: Chr01:29710400..29710443 (+ strand)
Length: 44
Type: CDS
Position: Chr01:29711259..29711426 (+ strand)
Length: 168
Type: CDS
Position: Chr01:29711427..29711790 (+ strand)
Length: 364
Type: three_prime_UTR


>Vigan.01G223800.01
CATCCTTGAC GCTGCTGCAA CGGAGCAGAT CATATCTTCC TTGCGACCAT GGTAGCCTCC ATTTCTTCTT TCTTTTCTTC
ACCCGCCCAA ATTCTTTGAC CTTCTTCCTT TCATTTCGAT TCACAGTCCC ATTTCGCAAA AAAACCACAG ATAAAAAGAA
ACCCTAAAAG TCGTCGTTCT CTCTTCTTCA GTCTCTCGCG TTCGGGACTT CGATCCGCGT GAATGTCCAA AGGCGCGTGG
TAATGGCGGG GAAGTCAGAC ACAGTGTCGA TCCGCGTTCC TTACAAGAAC CTCCACGACG ATTCTTCCGC TCCCGAACTC
GAACTCGTAG ATGTCGACCA CCGGGGCCAC CGGATCCACG TCAACTCGCC GCCGTCAATT CACTCGCCTT CGCCGCCAAG
CAACAGAGCT TCCTTGGTCA ATCTCGTTCT CAGTTGCACC GTAGCCGCTG GCGTCCAATT CGGTTGGGCC TTGCAGCTCT
CTCTCTTAAC GCCCTACATT CAGACGTTGG GAATAGGACA TGCTTTTTCT TCTTTTATCT GGCTTTGTGG TCCCATTACA
GGCCTTGTGG TTCAACCCTG CGTTGGTGTT TGGAGTGATA AATGTACGTC GAGGTTTGGC AGAAGGCGGC CGTTCATTCT
GGCAGGATCT CTTATGATAT CTGTGGCTGT GATATTAATC GGATTTTCTG CAGACATTGG ATATGTATTA GGTGATACAC
ACGAGCATTG CAGAACATTT AAAGGAACCC GAACAAGGGC TGCTCTTGTA TTTATTCTTG GGTTCTGGAT GCTGGACCTT
GCTAACAACA CGGTGCAGGG TCCTGCTCGA GCACTTTTGG CTGATCTGTC TGGTCCTGAT CAACGTAATG TGGCAAATGC
TATATTTTGC TCATGGATGG CAGCTGGGAA CATCCTAGGA TATTCTTCTG GTGCTAGTGG AAAGTGGAAC AAATGGTTCC
CTTTCCTGAC CACAAGAGCT TGCTGCGAAG CCTGTGGCAA TCTTAAGGCA GCATTTCTTG TGGCTGTGGT GTTTCTGGCA
TTATGCACAT TTGTCACCCT TTATTTTGCT GATGAGGTTC CACTTACCAC TGCAAGTCAA CATCATCACT TGTCAGATTT
TTCTCCTTTA TTGGATGAAC AACAACAAAA TGGTGTTGAA TTTTCAAAAT CAAGGCCTTT ATCTGTTATG GGTGAATCCA
ATGACCAGAG AACTGAAGAT CACATTGGGA AAGAGGCAGA GCTAAATCCT AAGAATTTCA AAGCTGGGGA AGATCATATT
GAAAATGTAA TGGATGGGCC TGGAGCAGTA TTGGTAAACT TGTTGACAAG TTTAAGGCAT TTGCCTCCTG CTATGCATTC
AGTCCTGATT GTAATGGCTC TCACTTGGTT GTCATGGTTT CCCTTCTTTC TGTTTGACAC GGATTGGATG GGGAGAGAAG
TTTATCATGG TGATCCAAAA GGGGGCACTT CTGAAATAGA TCTTTACGAT CAAGGTGTTA GAGAAGGTGC ATTTGGTTTG
CTATTGAATT CAGTTGTCCT TGGAATTAGC TCTTTTTTCA TTGAACCAAT GTGTAAGTGG ATGGGCACGA AATTGGTATG
GGCGCTGAGC AATTTTATTG TCTTTGTCTG CATGGCTGGC ACTGCTATCA TTAGTCTGAT TTCCATTCGA AATCATTCTG
GAGGGATAGA ACATGTAATT GGAGCAAGTG TAGCAATCAA GATTGCTTCC TTGGTTGTGT TTGTTCTTCT TGGTTTTCCT
CTTGCGATTA CCTACAGTGT ACCCTTTGCT GTCACAGCAG AGTTGACTGC TGATTCAGGA GGTGGCCAAG GATTGGCCAT
AGGAGTTCTA AATCTTGCAA TTGTTGTTCC TCAGATTGTT ATATCCCTTG GTTGTGGTCC CTGGGATGCT CTCTTTGGTG
GTGGAAATAT TCCTGCCTTT GTTCTGGCCT CCGTTTGTGC TCTGGCTGGT GGTATAATTG CAACTCTCAA ACTGCCAAAT
CTATCTAGCA ATTTCCAGTC AACAGGATTT CATATGGGTT AGCCCTTCGA AGATCTATTC TGGCAATATT TTATCTTGTA
CATGTTGCTC TAAAATCGAG ACTGCACCCA AAATATGGAG AGCTTACACG ATGATTACTT GCTTTCCAAT CTACAGAAGG
CGCATGCCAT ATTCAAATTC ATTCATTTTC CCCCACATTA TGGGTGTCTG TATTTTATGT AACTCACTCA ACAGTAGAAG
AAAGCTTAGG GCATATAGTA ACACGGTTTT GTAATCCTTC ATGCATTCAC TTATGCCTTG TTGGGATGAT AAGTGTAATA
TAGAGGGGAA AAATAATAAT GAAATGAAAA GAAATAGAAG ACATTAATGA AATGAAAATG ACGTACAAAA AAATATGTTT
GCGAAT

>Vigan.01G223800.01
ATGGCGGGGA AGTCAGACAC AGTGTCGATC CGCGTTCCTT ACAAGAACCT CCACGACGAT TCTTCCGCTC CCGAACTCGA
ACTCGTAGAT GTCGACCACC GGGGCCACCG GATCCACGTC AACTCGCCGC CGTCAATTCA CTCGCCTTCG CCGCCAAGCA
ACAGAGCTTC CTTGGTCAAT CTCGTTCTCA GTTGCACCGT AGCCGCTGGC GTCCAATTCG GTTGGGCCTT GCAGCTCTCT
CTCTTAACGC CCTACATTCA GACGTTGGGA ATAGGACATG CTTTTTCTTC TTTTATCTGG CTTTGTGGTC CCATTACAGG
CCTTGTGGTT CAACCCTGCG TTGGTGTTTG GAGTGATAAA TGTACGTCGA GGTTTGGCAG AAGGCGGCCG TTCATTCTGG
CAGGATCTCT TATGATATCT GTGGCTGTGA TATTAATCGG ATTTTCTGCA GACATTGGAT ATGTATTAGG TGATACACAC
GAGCATTGCA GAACATTTAA AGGAACCCGA ACAAGGGCTG CTCTTGTATT TATTCTTGGG TTCTGGATGC TGGACCTTGC
TAACAACACG GTGCAGGGTC CTGCTCGAGC ACTTTTGGCT GATCTGTCTG GTCCTGATCA ACGTAATGTG GCAAATGCTA
TATTTTGCTC ATGGATGGCA GCTGGGAACA TCCTAGGATA TTCTTCTGGT GCTAGTGGAA AGTGGAACAA ATGGTTCCCT
TTCCTGACCA CAAGAGCTTG CTGCGAAGCC TGTGGCAATC TTAAGGCAGC ATTTCTTGTG GCTGTGGTGT TTCTGGCATT
ATGCACATTT GTCACCCTTT ATTTTGCTGA TGAGGTTCCA CTTACCACTG CAAGTCAACA TCATCACTTG TCAGATTTTT
CTCCTTTATT GGATGAACAA CAACAAAATG GTGTTGAATT TTCAAAATCA AGGCCTTTAT CTGTTATGGG TGAATCCAAT
GACCAGAGAA CTGAAGATCA CATTGGGAAA GAGGCAGAGC TAAATCCTAA GAATTTCAAA GCTGGGGAAG ATCATATTGA
AAATGTAATG GATGGGCCTG GAGCAGTATT GGTAAACTTG TTGACAAGTT TAAGGCATTT GCCTCCTGCT ATGCATTCAG
TCCTGATTGT AATGGCTCTC ACTTGGTTGT CATGGTTTCC CTTCTTTCTG TTTGACACGG ATTGGATGGG GAGAGAAGTT
TATCATGGTG ATCCAAAAGG GGGCACTTCT GAAATAGATC TTTACGATCA AGGTGTTAGA GAAGGTGCAT TTGGTTTGCT
ATTGAATTCA GTTGTCCTTG GAATTAGCTC TTTTTTCATT GAACCAATGT GTAAGTGGAT GGGCACGAAA TTGGTATGGG
CGCTGAGCAA TTTTATTGTC TTTGTCTGCA TGGCTGGCAC TGCTATCATT AGTCTGATTT CCATTCGAAA TCATTCTGGA
GGGATAGAAC ATGTAATTGG AGCAAGTGTA GCAATCAAGA TTGCTTCCTT GGTTGTGTTT GTTCTTCTTG GTTTTCCTCT
TGCGATTACC TACAGTGTAC CCTTTGCTGT CACAGCAGAG TTGACTGCTG ATTCAGGAGG TGGCCAAGGA TTGGCCATAG
GAGTTCTAAA TCTTGCAATT GTTGTTCCTC AGATTGTTAT ATCCCTTGGT TGTGGTCCCT GGGATGCTCT CTTTGGTGGT
GGAAATATTC CTGCCTTTGT TCTGGCCTCC GTTTGTGCTC TGGCTGGTGG TATAATTGCA ACTCTCAAAC TGCCAAATCT
ATCTAGCAAT TTCCAGTCAA CAGGATTTCA TATGGGTTAG 

>Vigan.01G223800.01
MAGKSDTVSI RVPYKNLHDD SSAPELELVD VDHRGHRIHV NSPPSIHSPS PPSNRASLVN LVLSCTVAAG VQFGWALQLS
LLTPYIQTLG IGHAFSSFIW LCGPITGLVV QPCVGVWSDK CTSRFGRRRP FILAGSLMIS VAVILIGFSA DIGYVLGDTH
EHCRTFKGTR TRAALVFILG FWMLDLANNT VQGPARALLA DLSGPDQRNV ANAIFCSWMA AGNILGYSSG ASGKWNKWFP
FLTTRACCEA CGNLKAAFLV AVVFLALCTF VTLYFADEVP LTTASQHHHL SDFSPLLDEQ QQNGVEFSKS RPLSVMGESN
DQRTEDHIGK EAELNPKNFK AGEDHIENVM DGPGAVLVNL LTSLRHLPPA MHSVLIVMAL TWLSWFPFFL FDTDWMGREV
YHGDPKGGTS EIDLYDQGVR EGAFGLLLNS VVLGISSFFI EPMCKWMGTK LVWALSNFIV FVCMAGTAII SLISIRNHSG
GIEHVIGASV AIKIASLVVF VLLGFPLAIT YSVPFAVTAE LTADSGGGQG LAIGVLNLAI VVPQIVISLG CGPWDALFGG
GNIPAFVLAS VCALAGGIIA TLKLPNLSSN FQSTGFHMG*