VIGGS:GBrowse

Vigan.01G224100.01

Basic Information:

Name:	Vigan.01G224100.01 Multiple alignment Variant Information
Position:	Chr01:29733702..29737008 (+ strand)
Length:	3307

Functional Information:

Description:	Similar to homeobox-leucine zipper protein ATHB-13-like. [XP_004511225.1, Cicer arietinum]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Cellular Component: nucleus (GO:0005634)
	Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976)
	Molecular Function: DNA binding (GO:0003677)
	Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
	Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro:	Helix-turn-helix motif (IPR000047)
	Homeobox domain (IPR001356)
	Leucine zipper, homeobox-associated (IPR003106)
	Homeodomain-like (IPR009057)
	Homeobox, conserved site (IPR017970)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:288.76,209.25,38.27,13.33,15.94,18.45,26.58,52.11

Automatic updates:

Name:	NM_001255758 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max homeobox-leucine zipper protein ATHB-13-like (LOC100801479), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:29733702..29734186 (+ strand)
Length:	485
Type:	five_prime_UTR

Position:	Chr01:29734187..29734298 (+ strand)
Length:	112
Type:	CDS

Position:	Chr01:29734384..29734760 (+ strand)
Length:	377
Type:	CDS

Position:	Chr01:29735508..29735855 (+ strand)
Length:	348
Type:	CDS

Position:	Chr01:29735856..29737008 (+ strand)
Length:	1153
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G224100.01
AATAAAAGAA CCCAGTGATA TATATTGAGG ACGGTGTATG GAACTATAGA TTCAAACATA TCTCACCCCC TGTCCCTCTC
TTCCTCTCTT CTTTCTTCTA TCACCTTTTC CTTCCAACTT CCTTTTCCTT TTGAAATTAT CACATAAGAA AACAAGAGCT
CCCCCTTAAA CTGATAAGGT ATATAAGCCA CCCTTCACAG CAATTTGTCC ATCTTCTTCA ATTTATTGGC GGAAGATGTG
GCGCATTAGA GACCTTAGTC TTGTTCACAG TAGTTCTCTC CGTAGAAGCT GATATGCTTT ATAAGCCATC CTATTTAATT
TAGCAGAAGG TGTTCTGTAT TAGACCATAT TCTTTATCTG TTGTTTGTTT CACAACGACA CAGTTTATCC TTTGAGCATC
AGCGATCTTC TCTTCTCATC CCACATGGTG ATCAGAATAT CATTCAGCTA TTGAAGATCA GTGGCAGGCA CAGACTAGCA
ATGATATGGC TTTCTTCCCA GCAAATTTCA TGCTACAAAC ACCTCACCAG GAAGACCATC AACCTCCACC TTCACTCAAC
TCAATTATAA CTTCATGTGC ACCTCAAGAG TACCATGGAG GAGCATCCTT TCTAGGCAAG AGATCTATGT CATTTTCGGG
GATTGAACTT GGAGAAGAAG CTAATGCCGA GGAGGACTTA TCTGATGACG GATCACAAGC AGGAGAGAAG AAAAGGAGGC
TTAACATGGA ACAGGTTAAG ACACTTGAGA AGAGCTTTGA GTTGGGAAAC AAGCTTGAAC CAGAGAGGAA AATGCAGCTG
GCAAGGGCTC TTGGCTTGCA GCCTAGACAG ATTGCTATAT GGTTCCAGAA CAGGAGAGCT AGGTGGAAGA CCAAGCAGTT
GGAGAAGGAC TACGATCTTC TCAAAAGACA ATATGAAGCT ATCAAGGCAG ATAATGATGC ACTTCAAGCT CAGAACCAAA
AACTTCAGAC CGAGATATTG GCACTGAAAA GCAGAGAACC AACCGAATCC ATCAACCTCA ATAAAGAAAC TGAGGGCTCC
AGCAGCAATA GAAGTGAGAA CAGCTCAGAA ATCAAGTTGG ATATCTCAAG AACCCCAGCT ATTGACAGTC CTCTATCCAC
TCAGCAGAAC AGCAGAAACC TCTTTCCATC TTCTACTAGA CCAACAGGAG TTGCTCAGCT TTTCCAAACC GCTTCAAGGC
CAGAACTTCA GTGCCAAAAG ATTGATCATA TGGTCAAAGA AGAGAGCTTA AGCAACATGT TCTGTGGCAT TGATGATCAA
TCTAGTCTTT GGCCTTGGTT GGAGCAGCAG CATTTCAATT GATCAAGCAG CAAAGAGAGG GTGAGAAAGT GAGAGAGAAA
GAGAGAGAGA GAGAGAGAGA GAGAGAGAGT TTGAGATTGC AATGTAGTTT TCCCTTTTCC GGATGAAAAC GAAATCATCG
CGAGGGTGTC TGTGTCAATT GATTACCATA CTTAATGAGT TATTACATTA AAACCCGTGT TTTGGTAAAA AATTGATATA
TAAATTAAGA TATATCAAGT AGAATATTTC AGGTGGGGCT TGAAAATTTT ACATAAAAAG AATAAAGACT TGGTCACCTT
TTCTTTTTCA GTTAATAAAA ATGACTAATT TTCTTGAAAC TTTTGAGTAA AGGGTGGTGA GAAAAAAATT CCAATTAACT
GCGAGACCGT GCTTGTTGGT GTCTGATTGA GAGGCAATGG CAGAGGGGCC ACTAAAGGGA GAGATTCTCT TTACATTTTC
CCCAATTTTT TAATCCAATT ATAACTTTGC TTGCTTTTGA ATCAAACCTT TGTACTGCTA AAGAATTTCA TTTTGCATGT
ACTACGTACG AGAGTCTTTC TGGTGTCTAT GTGTTGGCAT AGACATTAAA CGTGAGAGTT TCTTTTAATA AGAATTTAAT
TATGATGTAT GAGGCTATAG AGGTTGTAAA ATTTATTTAT GTGATGATTT GTTTGATCCG TGATGAGTAT AGCATAGCAT
ATAGAAGGGT AATGAAATTT GAGAAAGTGG GTATTAAAAA AGAAAGGAAT CAAACACAGA TTTCAAGAGA GAAAGAAGAC
AAGGAGATGG AAAGGGTGGG AAGAAAACAA GGAGAGTTGG AAATGGTCAT TCTCGTGAAT GGGACATTGT CGATTTTGTT
GTTGATGACA AGGGAAGGAG CGAGAGTGGA TCAGTGTAGT AGTCCTTGCT ACTCCATGTG TGATCACTGT CACCCACTTC
TCTCTTTTCA CCTTCACTTT CAACTCATCT CTCTCTCCTT CTACACTTTT CCTTTTCCCT TTGCACTTGA TAATGAAAGT
GGTCAAAATT TGCCACTCAA AATAAACCAA ATTATATTAT GCTTGTCATG TCACCACCTA TTATTTTGCT TCCTCCCATA
TCTCTACGTC ATAAAACAAC TGTTCATTGT CATGCAGAGC AACTCGACAA AATTCAGCTC AGGTGAATAT GCATG

[show][hide][copy]CDS

>Vigan.01G224100.01
ATGGCTTTCT TCCCAGCAAA TTTCATGCTA CAAACACCTC ACCAGGAAGA CCATCAACCT CCACCTTCAC TCAACTCAAT
TATAACTTCA TGTGCACCTC AAGAGTACCA TGGAGGAGCA TCCTTTCTAG GCAAGAGATC TATGTCATTT TCGGGGATTG
AACTTGGAGA AGAAGCTAAT GCCGAGGAGG ACTTATCTGA TGACGGATCA CAAGCAGGAG AGAAGAAAAG GAGGCTTAAC
ATGGAACAGG TTAAGACACT TGAGAAGAGC TTTGAGTTGG GAAACAAGCT TGAACCAGAG AGGAAAATGC AGCTGGCAAG
GGCTCTTGGC TTGCAGCCTA GACAGATTGC TATATGGTTC CAGAACAGGA GAGCTAGGTG GAAGACCAAG CAGTTGGAGA
AGGACTACGA TCTTCTCAAA AGACAATATG AAGCTATCAA GGCAGATAAT GATGCACTTC AAGCTCAGAA CCAAAAACTT
CAGACCGAGA TATTGGCACT GAAAAGCAGA GAACCAACCG AATCCATCAA CCTCAATAAA GAAACTGAGG GCTCCAGCAG
CAATAGAAGT GAGAACAGCT CAGAAATCAA GTTGGATATC TCAAGAACCC CAGCTATTGA CAGTCCTCTA TCCACTCAGC
AGAACAGCAG AAACCTCTTT CCATCTTCTA CTAGACCAAC AGGAGTTGCT CAGCTTTTCC AAACCGCTTC AAGGCCAGAA
CTTCAGTGCC AAAAGATTGA TCATATGGTC AAAGAAGAGA GCTTAAGCAA CATGTTCTGT GGCATTGATG ATCAATCTAG
TCTTTGGCCT TGGTTGGAGC AGCAGCATTT CAATTGA

[show][hide][copy]PROTEIN

>Vigan.01G224100.01
MAFFPANFML QTPHQEDHQP PPSLNSIITS CAPQEYHGGA SFLGKRSMSF SGIELGEEAN AEEDLSDDGS QAGEKKRRLN
MEQVKTLEKS FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDLLK RQYEAIKADN DALQAQNQKL
QTEILALKSR EPTESINLNK ETEGSSSNRS ENSSEIKLDI SRTPAIDSPL STQQNSRNLF PSSTRPTGVA QLFQTASRPE
LQCQKIDHMV KEESLSNMFC GIDDQSSLWP WLEQQHFN*