GBrowse Details

Vigan.01G226600.01

Basic Information:
Name: Vigan.01G226600.01
Multiple alignment
Variant Information
Position: Chr01:30135058..30137873 (+ strand)
Length: 2816
Functional Information:
Description: Similar to VDAC1.3. [Q6W2J3, Lotus japonicus]
GO: Biological Process: anion transport (GO:0006820)
Biological Process: regulation of anion transport (GO:0044070)
Biological Process: transmembrane transport (GO:0055085)
Cellular Component: mitochondrial outer membrane (GO:0005741)
Molecular Function: voltage-gated anion channel activity (GO:0008308)
InterPro: Porin, eukaryotic type (IPR001925)
Porin domain (IPR023614)
Eukaryotic porin/Tom40 (IPR027246)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:126.60,65.00,130.82,82.29,123.17,320.12,92.08,72.25
Automatic updates:
Name: BT095468 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-19M8 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254125 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mitochondrial outer membrane protein porin of 36 kDa-like (LOC100805016), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:30135058..30135321 (+ strand)
Length: 264
Type: five_prime_UTR
Position: Chr01:30135322..30135370 (+ strand)
Length: 49
Type: CDS
Position: Chr01:30135498..30135565 (+ strand)
Length: 68
Type: CDS
Position: Chr01:30135897..30136007 (+ strand)
Length: 111
Type: CDS
Position: Chr01:30136325..30136411 (+ strand)
Length: 87
Type: CDS
Position: Chr01:30136558..30136766 (+ strand)
Length: 209
Type: CDS
Position: Chr01:30136872..30137178 (+ strand)
Length: 307
Type: CDS
Position: Chr01:30137179..30137873 (+ strand)
Length: 695
Type: three_prime_UTR


>Vigan.01G226600.01
GTAGTTTACA CGTAGTACAA GCTGAACAAC TCACGAATTG ACACCAGAAA AAAGAATCAC GAATATGCTC CCAGCTCAAC
TCTTGTCCCG ATTCTCGTGG CAACTCTTCC TCTTCTTCTA AATCAACGAT CACCGTTTCA TCTTCCCATC CAACGGTTCT
CCTTCATTCT CTCCCTCCCC AATATTAGGG TTTCGTTTTC TTCATCTTCG GACACTTCCC ACATTTTCTC CTCTTCTCCC
TCCTTCAGTT TTCTCGCAAA AATCATGGTG AAAGGTCCAG GTCTCTACAC TGACATCGGC AAGAGAGCTC GAGATCTTCT
GTTCAAGGAT TATCAGAATG ACCACAAGTT CACCATCACC ACTCACACTT CTACTGGAGT GGAAATTACT TCAACTGGAG
TCAGGAAGGG TGAGTTATAT TTGGCCGATA TCAGCACTAA GCTGAAGAAC AAGAACATCA CATCTGATAT CAAAGTGGAC
ACTAACTCAA GTCTACGTAC AACCATTACC GTGGATGAAC CCGCTCCTGG ACTCAAGGCA ATTTTTAGCT TTATTTTTCC
AGATCAGAAA TCTGGCAAGG TGGAACTCCA GTACCTGCAC GAGTATGCTG GAATCAGCAC CAGCATTGGA TTGACAGCAA
ATCCCATTGT TAACTTCTCT GGTGTGGTTG GAAATAATTT GGTCGCTGTG GGGACAGATC TTTCATTTGA TACTGCGTCC
GGCAACTTTA CTAAATACAA TGCTGGGCTG AATATTACAC ATGCTGACCT CATTGCATCT CTAACTCTAA ATGATAAAGG
TGATACCCTC AATGCCTCAT ATTACCACAT TGTAAGCCCG TTGACTAACA CTGCCGTTGG CGCGGAGCTT TCACATAACT
TTTCCAGCAA TGAGAATTCA CTCACCATTG GTACACAACA TGCTCTGGAC CCGTTAACGC ACTTGAAAGC TCGGGTGAAC
AACTATGGTC TGGCAAGTGC TCTGATTCAG CATGACTGGA ATCCAAAAAC TCGTTTCTCT CTTGTTGGGG AGGTGGATAC
TGGGGCCATC GGAAAGAGTG CAAAGGTTGG TCTTGCTGTG GCCTTGAAAC CTTAGATTTA GGTTTCACTT GTGGAGGTAA
TAAGTAATTG TAGGGTTTCG ATTTCCGAAT GAACCTTTGG TCCTTCATTC TGGAGCTATA TCAATTTCTT GATATATTGG
TGGGCTCGAG TGTACAATCA ATAAGCACAA ACAAAACTTC AATTTGTACT TAACAGATCC ACTCGAATTT TATTGATTTG
GGGGCACCTT TGCGTAAGTT TTTTCGGCAT GGAAGGTGAT TAATTTCAAT ATAATTTGGG GTGTACATCA AAGGTTTGAT
TAGATGGCTG GCGCGTGTTT GGTAATATTT AGTTTTCTTG GTTTTATATT TGAAATCATC CAGATTTTTA ATGTATCTAT
TAAGATGCTC ATTACACAAA ACGACCCGAA TGAGAAACCG ATTTAGACAA GGATTAATTA AAATTTATTC CAACTAGTTA
AAGTCTTTAA AGAGATCTGA AGTTTGATTT TCTCCAACCT TTTAAGGGGG AAGATGTACT AAATCGAGCA AGAGAGCCTC
TCATCTGTTG GAGTTGTGTG ATGGTCTCGC GTCTATTAAT TTTCTGTCCG GATTTGTTCC AGGAAACCTA TATTGAAAAC
TAACCAGAGA ATCTAAATTC TAATTACAGT CTTTAAACTA CTAGTTCATC GAGTGGCTAT TTCTTTCTCT AAAGACTTAA
TAACTAAACT TTACAGACTT TGTAAATTTG 

>Vigan.01G226600.01
ATGGTGAAAG GTCCAGGTCT CTACACTGAC ATCGGCAAGA GAGCTCGAGA TCTTCTGTTC AAGGATTATC AGAATGACCA
CAAGTTCACC ATCACCACTC ACACTTCTAC TGGAGTGGAA ATTACTTCAA CTGGAGTCAG GAAGGGTGAG TTATATTTGG
CCGATATCAG CACTAAGCTG AAGAACAAGA ACATCACATC TGATATCAAA GTGGACACTA ACTCAAGTCT ACGTACAACC
ATTACCGTGG ATGAACCCGC TCCTGGACTC AAGGCAATTT TTAGCTTTAT TTTTCCAGAT CAGAAATCTG GCAAGGTGGA
ACTCCAGTAC CTGCACGAGT ATGCTGGAAT CAGCACCAGC ATTGGATTGA CAGCAAATCC CATTGTTAAC TTCTCTGGTG
TGGTTGGAAA TAATTTGGTC GCTGTGGGGA CAGATCTTTC ATTTGATACT GCGTCCGGCA ACTTTACTAA ATACAATGCT
GGGCTGAATA TTACACATGC TGACCTCATT GCATCTCTAA CTCTAAATGA TAAAGGTGAT ACCCTCAATG CCTCATATTA
CCACATTGTA AGCCCGTTGA CTAACACTGC CGTTGGCGCG GAGCTTTCAC ATAACTTTTC CAGCAATGAG AATTCACTCA
CCATTGGTAC ACAACATGCT CTGGACCCGT TAACGCACTT GAAAGCTCGG GTGAACAACT ATGGTCTGGC AAGTGCTCTG
ATTCAGCATG ACTGGAATCC AAAAACTCGT TTCTCTCTTG TTGGGGAGGT GGATACTGGG GCCATCGGAA AGAGTGCAAA
GGTTGGTCTT GCTGTGGCCT TGAAACCTTA G

>Vigan.01G226600.01
MVKGPGLYTD IGKRARDLLF KDYQNDHKFT ITTHTSTGVE ITSTGVRKGE LYLADISTKL KNKNITSDIK VDTNSSLRTT
ITVDEPAPGL KAIFSFIFPD QKSGKVELQY LHEYAGISTS IGLTANPIVN FSGVVGNNLV AVGTDLSFDT ASGNFTKYNA
GLNITHADLI ASLTLNDKGD TLNASYYHIV SPLTNTAVGA ELSHNFSSNE NSLTIGTQHA LDPLTHLKAR VNNYGLASAL
IQHDWNPKTR FSLVGEVDTG AIGKSAKVGL AVALKP*