VIGGS:GBrowse

Vigan.01G233800.01

Basic Information:

Name:	Vigan.01G233800.01 Multiple alignment Variant Information
Position:	Chr01:31520744..31521817 (+ strand)
Length:	1074

Functional Information:

Description:	Similar to Uncharacterized protein. [K7MRT9, Glycine max]
InterPro:	Gibberellin regulated protein (IPR003854)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:72.40,34.52,0.00,0.00,0.00,188.25,0.00,0.00

Automatic updates:

Name:	NM_001371561 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max gibberellin-regulated protein 31 (GASA31), mRNA.
PubMed ID:	31123969 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:31520744..31520893 (+ strand)
Length:	150
Type:	five_prime_UTR

Position:	Chr01:31520894..31520986 (+ strand)
Length:	93
Type:	CDS

Position:	Chr01:31521116..31521169 (+ strand)
Length:	54
Type:	CDS

Position:	Chr01:31521255..31521294 (+ strand)
Length:	40
Type:	CDS

Position:	Chr01:31521462..31521646 (+ strand)
Length:	185
Type:	CDS

Position:	Chr01:31521647..31521817 (+ strand)
Length:	171
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G233800.01
GCAGACTGCC AAAAGTAATT GACATTAATA ACAAAAGAAA GGGTGTCAGT GTAATTGCAT GAATAAGCCT ACTATAAAAC
ATGCCTCTCC CTTCAGATAT CTCACTCAAC ATTTGAAGAT CCTCCTCATA CCAAATTCAC AACACTTCAA ATGCAAGATA
AAGCTTCCAA AATGGAGAAC AAAAGGAAGA CTTTACTGTT GCTGCTGCTG CTCATGGCAA CACCATTCTT CTACATGCCA
AATGTGACGG AAGCTGCTTC TGATGTCAAC TTTGAAGGCC ATCTCACCCA TTCTGAGCTC GTGAAAGGAC CCATCAGAAA
GTTTTTGTCA TTTGTGGATT GTGGAGAGAG GTGCAGAGTG AGATGCAGTT TGCATTCGAG GCCAAAGATC TGCGGAAGAG
CTTGCGGGAC ATGCTGTTCA AGGTGCAACT GTGTTCCTCC AGGCACTTAT GGGAACAGAG AGGTGTGTGG GAAGTGTTAC
ACAGACATGA TCACTCATGG AAACAAACCT AAGTGTCCCT AGAACACACT TCCATCCATT TCCATTTCCT TTCTCTACTT
TTCACTGCAT AATGCATTCT GTATTTCATA CTTACTTTTC CTATCTGCCT GCTGTTCCTT GATTATCTCA ATCAATGTAT
CAGTTATGGA TATAGATCTT CCTCGTGTGT TTATGGATCA AACGAAACAA TGC

[show][hide][copy]CDS

>Vigan.01G233800.01
ATGCAAGATA AAGCTTCCAA AATGGAGAAC AAAAGGAAGA CTTTACTGTT GCTGCTGCTG CTCATGGCAA CACCATTCTT
CTACATGCCA AATGTGACGG AAGCTGCTTC TGATGTCAAC TTTGAAGGCC ATCTCACCCA TTCTGAGCTC GTGAAAGGAC
CCATCAGAAA GTTTTTGTCA TTTGTGGATT GTGGAGAGAG GTGCAGAGTG AGATGCAGTT TGCATTCGAG GCCAAAGATC
TGCGGAAGAG CTTGCGGGAC ATGCTGTTCA AGGTGCAACT GTGTTCCTCC AGGCACTTAT GGGAACAGAG AGGTGTGTGG
GAAGTGTTAC ACAGACATGA TCACTCATGG AAACAAACCT AAGTGTCCCT AG

[show][hide][copy]PROTEIN

>Vigan.01G233800.01
MQDKASKMEN KRKTLLLLLL LMATPFFYMP NVTEAASDVN FEGHLTHSEL VKGPIRKFLS FVDCGERCRV RCSLHSRPKI
CGRACGTCCS RCNCVPPGTY GNREVCGKCY TDMITHGNKP KCP*