GBrowse Details

Vigan.01G239700.01

Basic Information:
Name: Vigan.01G239700.01
Multiple alignment
Variant Information
Position: Chr01:32622964..32626619 (+ strand)
Length: 3656
Functional Information:
Description: Similar to Proteasome subunit beta type. [I1KXF0, Glycine max]
GO: Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603)
Cellular Component: proteasome core complex (GO:0005839)
Molecular Function: endopeptidase activity (GO:0004175)
Molecular Function: threonine-type endopeptidase activity (GO:0004298)
InterPro: Proteasome, subunit alpha/beta (IPR001353)
Proteasome beta-type subunit, conserved site (IPR016050)
Proteasome B-type subunit (IPR023333)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:53.69,42.51,84.72,55.72,122.77,181.69,103.64,69.36
Arabidopsis thaliana homolog: AT3G60820.1
Automatic updates:
Name: NM_001251395 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative proteasome subunit beta type-1 (LOC100306148), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001289230 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max proteasome subunit beta type-1-like (LOC100810291), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:32622964..32623090 (+ strand)
Length: 127
Type: five_prime_UTR
Position: Chr01:32623091..32623137 (+ strand)
Length: 47
Type: CDS
Position: Chr01:32623219..32623326 (+ strand)
Length: 108
Type: CDS
Position: Chr01:32623481..32623562 (+ strand)
Length: 82
Type: CDS
Position: Chr01:32625559..32625688 (+ strand)
Length: 130
Type: CDS
Position: Chr01:32625766..32625908 (+ strand)
Length: 143
Type: CDS
Position: Chr01:32625994..32626080 (+ strand)
Length: 87
Type: CDS
Position: Chr01:32626152..32626226 (+ strand)
Length: 75
Type: CDS
Position: Chr01:32626227..32626619 (+ strand)
Length: 393
Type: three_prime_UTR


>Vigan.01G239700.01
AGTGAATAGA GTTAAAAAGA CTAGAGAGAG AAGGCAAGGG AAAAAAAAAA ACCTTTCTTT TTCACTTCGA CGCCCTAGTT
CATTCTCTTC TCCATTCTCT GTGTTTTCCA TTCTCCCTTC GCTCACTATG ACGAAGCAAC ACGCTAATTG GTCTCCATAC
GATAATAATG GAGGATCATG TGTTGCGATT GCTGGAGCCG ATTACTGTGT TATCGCCGCA GACACCAGAA TGTCCACCGG
TTACAACATC CTCACTCGGG ATTACTCCAA AATCTCCCAA TTAGCGGAAA AGTGTGTGAT GGCTTCTTCT GGTTTTCAAG
CTGATGTGAA AGCCTTGCAG AAGGTTTTGT CTGCTAGGCA TTTGATTTAT CAGCATCAAC ATAACAAGCA AATGAGCTGC
CCTGCAATGG GTCAGCTTCT TTCAAACACA CTTTATTACA AACGCTTCTT TCCCTATTAT GCATTCAATG TTTTGGGTGG
CCTTGACAAT GAAGGAAAGG GATGTGTTTT CACATATGAT GCTGTTGGTT CCTATGAGAG GGTTGGATAT AGTTCTCAGG
GTTCTGGATC CACACTTATC ATGCCATTTC TGGATAACCA GCTGAAGTCT CCTAGCCCAC TGCTGTTACC TGCCAAGGAT
GCTGTTACTC CACTGTCTGA ATCAGAAGCA GTTGATCTGG TTAAAACTGT TTTTGCATCT GCAACTGAGA GAGATATATA
CACGGGGGAC AAGGTTGAAA TCGTCATCCT AAATGCCAGT GGTATTCGTC GTGAGTACAT GGACTTAAGG AAAGACTAGT
GCTCTCTAAA AAATGTTTGA AATGCTTCTG GAATTTTAAA TGGCAGTGGG GTTTTCCCAT GAGGTGAAAT TAAGAATAGC
ATTTCCTCTG AAGTTGCTTT GAGCAAGTAC TTTTCTGTTC ACATTATAAC TACTGGGATT CACTTATATT TGCATTGGAT
TTTTGTCGTA GTCTATTTCT AAACTTTAGT GTGCATTTTA TATCTTGTTA TAGCCTGTTT AAGTGCCGTC TTTTTCCATG
ATTGCATTGT GTTTTGCTTA GTAAGTTCAA TATCTCACGA ATATTTTCTC AAAATTACCT TTTAAATCAT TTAGTTAACG
TATAAATACG GTCCTCCTTG AGGTGGCTAG TTTTGAATTC GTTGTTCGAG GAATTTTCTA GCTATGAACG AG

>Vigan.01G239700.01
ATGACGAAGC AACACGCTAA TTGGTCTCCA TACGATAATA ATGGAGGATC ATGTGTTGCG ATTGCTGGAG CCGATTACTG
TGTTATCGCC GCAGACACCA GAATGTCCAC CGGTTACAAC ATCCTCACTC GGGATTACTC CAAAATCTCC CAATTAGCGG
AAAAGTGTGT GATGGCTTCT TCTGGTTTTC AAGCTGATGT GAAAGCCTTG CAGAAGGTTT TGTCTGCTAG GCATTTGATT
TATCAGCATC AACATAACAA GCAAATGAGC TGCCCTGCAA TGGGTCAGCT TCTTTCAAAC ACACTTTATT ACAAACGCTT
CTTTCCCTAT TATGCATTCA ATGTTTTGGG TGGCCTTGAC AATGAAGGAA AGGGATGTGT TTTCACATAT GATGCTGTTG
GTTCCTATGA GAGGGTTGGA TATAGTTCTC AGGGTTCTGG ATCCACACTT ATCATGCCAT TTCTGGATAA CCAGCTGAAG
TCTCCTAGCC CACTGCTGTT ACCTGCCAAG GATGCTGTTA CTCCACTGTC TGAATCAGAA GCAGTTGATC TGGTTAAAAC
TGTTTTTGCA TCTGCAACTG AGAGAGATAT ATACACGGGG GACAAGGTTG AAATCGTCAT CCTAAATGCC AGTGGTATTC
GTCGTGAGTA CATGGACTTA AGGAAAGACT AG

>Vigan.01G239700.01
MTKQHANWSP YDNNGGSCVA IAGADYCVIA ADTRMSTGYN ILTRDYSKIS QLAEKCVMAS SGFQADVKAL QKVLSARHLI
YQHQHNKQMS CPAMGQLLSN TLYYKRFFPY YAFNVLGGLD NEGKGCVFTY DAVGSYERVG YSSQGSGSTL IMPFLDNQLK
SPSPLLLPAK DAVTPLSESE AVDLVKTVFA SATERDIYTG DKVEIVILNA SGIRREYMDL RKD*