GBrowse Details

Vigan.01G248000.01

Basic Information:
Name: Vigan.01G248000.01
Multiple alignment
Variant Information
Position: Chr01:34321519..34327100 (- strand)
Length: 5582
Functional Information:
Description: Similar to IMPACT family member in pol 5'region-like. [XP_004509680.1, Cicer arietinum]
InterPro: Impact, N-terminal (IPR001498)
Ribosomal protein S5 domain 2-type fold (IPR020568)
Impact family (IPR023582)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.19,4.81,3.96,12.22,6.04,6.61,3.39,5.12
Arabidopsis thaliana homolog: AT4G38090.1
Automatic updates:
Name: NM_001255377 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100820330 (LOC100820330), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:34321519..34321820 (- strand)
Length: 302
Type: three_prime_UTR
Position: Chr01:34321821..34321979 (- strand)
Length: 159
Type: CDS
Position: Chr01:34322579..34322632 (- strand)
Length: 54
Type: CDS
Position: Chr01:34322773..34322878 (- strand)
Length: 106
Type: CDS
Position: Chr01:34326090..34326205 (- strand)
Length: 116
Type: CDS
Position: Chr01:34326613..34326654 (- strand)
Length: 42
Type: CDS
Position: Chr01:34326742..34326969 (- strand)
Length: 228
Type: CDS
Position: Chr01:34326970..34327100 (- strand)
Length: 131
Type: five_prime_UTR


>Vigan.01G248000.01
CTCAAAAAAT TACAAAAAAA AGAAAGAGGA TGAGGCAAGG AGTGGGAGAA AGAGGCCATG GCTTCTGACG ATTGATTCAT
TATTTATAGC TCTGAGCGAC GCCGAAGGAG GAATATTTTG CAGACAGATA GATGCCTGTG TCGATAACGG TACCGAGTAC
TCAGCACCGC GTGTTCGCTT CACTCTTTGC CATCGCCAAG GCCAACAAAA CCACCATGGC CAGCACCAGC AGTTCTGTTG
GAGCCTTCAC CACAATCCAA GAGAGGGTCA CTTTCGAGAA AGAGATCAAG AAAAGCAAGT TCATTGCCAT TGCTGGCCCC
ATCGCCGATG AAAAATCCGT CATGTCTTTC CTTTCTCAGG TCCGGGATCC ACGTGCCACC CATAATTGCT GGGCTTACAA
GGTGGGAGAT CAATACCGGT CCAATGATGA CGGTGAGCCA TCAGGAACAG CTGGGAAACC AATACAAACT GCTATTGATT
CTTCAGGAAT AGACAGAGTA ATGGTAGTGG TGATCAGGCA TTTTGGGGGT ATCAAATTAG GAACTGGGGG ATTGGTCAGA
GCTTATGGAG GAGTTGCATC AGAATGCTTG AGGAATGCCC CAACTTGTCT TGTGAAAACA AAGGTGCCAA TGGGTGTAGA
GGTTCCCTTC GACCTACTTG GAGTTCTCTA CCATCAGGTG CAATCTTTTC ATGTGGAAGA CATCAAGCAG GATTATGATA
CCGGTAAAGA TGGCATATCT ATGGTTACTT TTAAAGTTGA TTTTGACCAA GTTGACAAAT TGGAGGATGC ACTGAAAGCC
AATTGTAACA GAGAATTGAA GTTTTATATG CGGTGAAACA TGATCACATG AAATCAGTCT TAGGATTTTG ATTATATTTT
TCTTATATAT GGAAGATACT TCTTCACCTG AAGATGGGAT GAACAGGACA TCTCCAGGAC CTTGACTAAT TTGAAAATGA
GGAAACTCAT AATAGTTTAA AAACTAGAAG GCATTTGTTT GTAATGTACT GATAATGTTG CATAATTTGT AAATTCAGTA
GAAGTTACCT AGGGTATAAT TTATACAGAA GCTGCACAAA ATTGTACTCT TTCTGGACTT ATAATTTAAA AGTAACAAAA
ATTAATCGTG GAATCAAA

>Vigan.01G248000.01
ATGCCTGTGT CGATAACGGT ACCGAGTACT CAGCACCGCG TGTTCGCTTC ACTCTTTGCC ATCGCCAAGG CCAACAAAAC
CACCATGGCC AGCACCAGCA GTTCTGTTGG AGCCTTCACC ACAATCCAAG AGAGGGTCAC TTTCGAGAAA GAGATCAAGA
AAAGCAAGTT CATTGCCATT GCTGGCCCCA TCGCCGATGA AAAATCCGTC ATGTCTTTCC TTTCTCAGGT CCGGGATCCA
CGTGCCACCC ATAATTGCTG GGCTTACAAG GTGGGAGATC AATACCGGTC CAATGATGAC GGTGAGCCAT CAGGAACAGC
TGGGAAACCA ATACAAACTG CTATTGATTC TTCAGGAATA GACAGAGTAA TGGTAGTGGT GATCAGGCAT TTTGGGGGTA
TCAAATTAGG AACTGGGGGA TTGGTCAGAG CTTATGGAGG AGTTGCATCA GAATGCTTGA GGAATGCCCC AACTTGTCTT
GTGAAAACAA AGGTGCCAAT GGGTGTAGAG GTTCCCTTCG ACCTACTTGG AGTTCTCTAC CATCAGGTGC AATCTTTTCA
TGTGGAAGAC ATCAAGCAGG ATTATGATAC CGGTAAAGAT GGCATATCTA TGGTTACTTT TAAAGTTGAT TTTGACCAAG
TTGACAAATT GGAGGATGCA CTGAAAGCCA ATTGTAACAG AGAATTGAAG TTTTATATGC GGTGA

>Vigan.01G248000.01
MPVSITVPST QHRVFASLFA IAKANKTTMA STSSSVGAFT TIQERVTFEK EIKKSKFIAI AGPIADEKSV MSFLSQVRDP
RATHNCWAYK VGDQYRSNDD GEPSGTAGKP IQTAIDSSGI DRVMVVVIRH FGGIKLGTGG LVRAYGGVAS ECLRNAPTCL
VKTKVPMGVE VPFDLLGVLY HQVQSFHVED IKQDYDTGKD GISMVTFKVD FDQVDKLEDA LKANCNRELK FYMR*