VIGGS:GBrowse

Vigan.01G256700.01

Basic Information:

Name:	Vigan.01G256700.01 Multiple alignment Variant Information
Position:	Chr01:36515667..36519360 (- strand)
Length:	3694

Functional Information:

Description:	Similar to Pyruvate kinase. [V7CI76, Phaseolus vulgaris]
GO:	Biological Process: glycolysis (GO:0006096)
	Molecular Function: magnesium ion binding (GO:0000287)
	Molecular Function: catalytic activity (GO:0003824)
	Molecular Function: pyruvate kinase activity (GO:0004743)
	Molecular Function: potassium ion binding (GO:0030955)
InterPro:	Pyruvate kinase (IPR001697)
	Pyruvate kinase-like, insert domain (IPR011037)
	Pyruvate kinase, barrel (IPR015793)
	Pyruvate kinase, alpha/beta (IPR015794)
	Pyruvate kinase, C-terminal (IPR015795)
	Pyruvate kinase, beta-barrel insert domain (IPR015806)
	Pyruvate/Phosphoenolpyruvate kinase-like domain (IPR015813)
	Pyruvate kinase, active site (IPR018209)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:40.90,37.21,47.93,44.90,58.62,46.78,76.54,45.35
Arabidopsis thaliana homolog:	AT3G04050.1, AT3G25960.1, AT3G55650.1, AT3G55810.1, AT4G26390.1, AT5G08570.1, AT5G56350.1, AT5G63680.1

Automatic updates:

Name:	NM_001249502 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max pyruvate kinase (PK3), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:36515667..36515895 (- strand)
Length:	229
Type:	three_prime_UTR

Position:	Chr01:36515896..36516708 (- strand)
Length:	813
Type:	CDS

Position:	Chr01:36517200..36517661 (- strand)
Length:	462
Type:	CDS

Position:	Chr01:36518919..36519149 (- strand)
Length:	231
Type:	CDS

Position:	Chr01:36519150..36519360 (- strand)
Length:	211
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G256700.01
AGAACATTAT GTGGATGGTA TTCCTATAAA AGTGTCACAA TCTTAGTGTT TTAAAAAAAA AAAAAGAATA AAAAAAATTG
GGTTGCAGGG AGCATAAAAT ACAAGAGTCG CATCTCAACC TTTCTTGTCT TGTCTACTCT TTTGCGTGTT TTGGTTGAAA
AACAAAGAGA GTGGTTTTCG TTGTTTGAGA AACATAGGAA CTAAAGCAGA AATGGCGACG ACGGTTCAGG CAGAGAAGAG
ACCCAAAACG AAGATCGTGT GCACGCTGGG ACCCGCATCG CGCTCCGTTC CCATGGTCGA GAAGCTTCTA CGAGCCGGCA
TGAACGTTGC TCGCTTCAAC TTCTCACATG GGTCCCACGA ATACCACCAG GAAACCCTCG ATAACCTCAG AGCCGCCATG
GAGAACACCG GTATTCTCTG CGCCGTCATG CTCGACACCA AGGGGCCTGA GATTCGAACT GGATTTCTCA AGGATGGTAA
GCCTATCCAA CTGAAACAAG GTAATGAGAT AACCATTTCC ACTGACTATA GCCTAAAGGG TGATGAAAAA ATGATTTGTA
TGAGCTACAA AAAGTTGGCT GAGGATGTGA AGCCCGGAAT GGTCATACTG TGTGCGGATG GCACCATATC ATTTACAGTT
TTATCGTGTG ACAAAAAAAT GGGTTTGGTT CAATGCCGGT GTGAGAACTC TGCCACTCTT GGTGAGAGGA AGAATGTTAA
TTTGCCTGGA GTGATAGTGG ATCTCCCAAC TTTGACAGAG AAAGACAAGG AAGATATCTT GGTCTGGGGA GTTCCCAATA
AAATCGACAT GATTGCTCTT TCGTTTGTTC GAAAAGGTTC TGACCTGGTG GAAGTCAGGA AAGTTCTTGG AAAACATGCT
AGGAACATTA TGCTCATGTC TAAGGTTGAA AACCAAGAAG GGGTTGCGAA CTTTGATGAA ATCCTTGCAA ATTCAGATGC
ATTTATGGTG GCTCGTGGCG ACCTTGGAAT GGAAATTCCA ATAGAGAAGA TATTTCTCGC ACAGAAAGTG ATGATTTATA
AGTGCAATAT CCAAGGAAAA CCTGTTGTTA CCGCAACCCA GATGTTGGAG TCGATGATCA AATCTCCCAG GCCAACTCGG
GCCGAAGCTA CTGATGTTGC TAATGCAGTT CTGGATGGCA CAGACTGTGT GATGCTCAGT GGTGAAACAG CTGCTGGAGC
TTATCCAGAA CTTGCTGTTC GAACTATGGC TAAAATATGT ATTGAAGCAG AGAGCACCCT TGATTATGGA GATGTTTTTA
AAAGGATTAT GGAACACTCA CCGGTACCCA TGAGCCCATT GGAGAGTTTA GCTTCTTCTG CTGTTAGAAC AGCCAACTCG
GCTAAAGCGG TTCTTATATT GGTTTTAACT AGAGGAGGGA GTACTGCAAA ATTGGTGGCT AAATACAGGC CAGGCATGCC
AATTCTTTCT GTAGTTGTTC CTGAGCTCAA GACTGATACC TTTGACTGGG CATGCAGTGA CGAGGCCCCT GCGAGACACA
GCCTGATATT CCGTGGATTG GTTCCAGTAT TGAGTGCAGC GTCTGCTAGA GCTTCTCATG CTGAAACAAC TGAAGAAGCC
ATAGAGTTTG CCATGCAACA TGCCAAGTCC AAGGGTCTCT GCCATAATGG GGATTCTATT GTGGCACTGC ATCGTGTGGG
AACTGCATCT GTCATCAAGA TCTTGACTGT GAAATGATCA CCCAATTAGG AGTTCTTCTG TTTTTTGGCG ATTATTTTAG
ATGGTGCAAA GAGGTTTCAT CACACCATTT CGAATCTACA TTGGTTGCAA ACTTACGTTA AAGCAATTTA TTAGGATGGG
TTCCCTGCTA TTTTCATACC ATATATTAAG GTTTCTTTGT TTCATTCGCC TTACCATCGT GGCGAGTAGC CACTTGTTTT
ATTTTGTTAA GATTTTGTAC GAGGCT

[show][hide][copy]CDS

>Vigan.01G256700.01
ATGGCGACGA CGGTTCAGGC AGAGAAGAGA CCCAAAACGA AGATCGTGTG CACGCTGGGA CCCGCATCGC GCTCCGTTCC
CATGGTCGAG AAGCTTCTAC GAGCCGGCAT GAACGTTGCT CGCTTCAACT TCTCACATGG GTCCCACGAA TACCACCAGG
AAACCCTCGA TAACCTCAGA GCCGCCATGG AGAACACCGG TATTCTCTGC GCCGTCATGC TCGACACCAA GGGGCCTGAG
ATTCGAACTG GATTTCTCAA GGATGGTAAG CCTATCCAAC TGAAACAAGG TAATGAGATA ACCATTTCCA CTGACTATAG
CCTAAAGGGT GATGAAAAAA TGATTTGTAT GAGCTACAAA AAGTTGGCTG AGGATGTGAA GCCCGGAATG GTCATACTGT
GTGCGGATGG CACCATATCA TTTACAGTTT TATCGTGTGA CAAAAAAATG GGTTTGGTTC AATGCCGGTG TGAGAACTCT
GCCACTCTTG GTGAGAGGAA GAATGTTAAT TTGCCTGGAG TGATAGTGGA TCTCCCAACT TTGACAGAGA AAGACAAGGA
AGATATCTTG GTCTGGGGAG TTCCCAATAA AATCGACATG ATTGCTCTTT CGTTTGTTCG AAAAGGTTCT GACCTGGTGG
AAGTCAGGAA AGTTCTTGGA AAACATGCTA GGAACATTAT GCTCATGTCT AAGGTTGAAA ACCAAGAAGG GGTTGCGAAC
TTTGATGAAA TCCTTGCAAA TTCAGATGCA TTTATGGTGG CTCGTGGCGA CCTTGGAATG GAAATTCCAA TAGAGAAGAT
ATTTCTCGCA CAGAAAGTGA TGATTTATAA GTGCAATATC CAAGGAAAAC CTGTTGTTAC CGCAACCCAG ATGTTGGAGT
CGATGATCAA ATCTCCCAGG CCAACTCGGG CCGAAGCTAC TGATGTTGCT AATGCAGTTC TGGATGGCAC AGACTGTGTG
ATGCTCAGTG GTGAAACAGC TGCTGGAGCT TATCCAGAAC TTGCTGTTCG AACTATGGCT AAAATATGTA TTGAAGCAGA
GAGCACCCTT GATTATGGAG ATGTTTTTAA AAGGATTATG GAACACTCAC CGGTACCCAT GAGCCCATTG GAGAGTTTAG
CTTCTTCTGC TGTTAGAACA GCCAACTCGG CTAAAGCGGT TCTTATATTG GTTTTAACTA GAGGAGGGAG TACTGCAAAA
TTGGTGGCTA AATACAGGCC AGGCATGCCA ATTCTTTCTG TAGTTGTTCC TGAGCTCAAG ACTGATACCT TTGACTGGGC
ATGCAGTGAC GAGGCCCCTG CGAGACACAG CCTGATATTC CGTGGATTGG TTCCAGTATT GAGTGCAGCG TCTGCTAGAG
CTTCTCATGC TGAAACAACT GAAGAAGCCA TAGAGTTTGC CATGCAACAT GCCAAGTCCA AGGGTCTCTG CCATAATGGG
GATTCTATTG TGGCACTGCA TCGTGTGGGA ACTGCATCTG TCATCAAGAT CTTGACTGTG AAATGA

[show][hide][copy]PROTEIN

>Vigan.01G256700.01
MATTVQAEKR PKTKIVCTLG PASRSVPMVE KLLRAGMNVA RFNFSHGSHE YHQETLDNLR AAMENTGILC AVMLDTKGPE
IRTGFLKDGK PIQLKQGNEI TISTDYSLKG DEKMICMSYK KLAEDVKPGM VILCADGTIS FTVLSCDKKM GLVQCRCENS
ATLGERKNVN LPGVIVDLPT LTEKDKEDIL VWGVPNKIDM IALSFVRKGS DLVEVRKVLG KHARNIMLMS KVENQEGVAN
FDEILANSDA FMVARGDLGM EIPIEKIFLA QKVMIYKCNI QGKPVVTATQ MLESMIKSPR PTRAEATDVA NAVLDGTDCV
MLSGETAAGA YPELAVRTMA KICIEAESTL DYGDVFKRIM EHSPVPMSPL ESLASSAVRT ANSAKAVLIL VLTRGGSTAK
LVAKYRPGMP ILSVVVPELK TDTFDWACSD EAPARHSLIF RGLVPVLSAA SARASHAETT EEAIEFAMQH AKSKGLCHNG
DSIVALHRVG TASVIKILTV K*