GBrowse Details

Vigan.01G257000.01

Basic Information:
Name: Vigan.01G257000.01
Multiple alignment
Variant Information
Position: Chr01:36618725..36623205 (+ strand)
Length: 4481
Functional Information:
Description: Similar to Antitermination NusB domain-containing protein isoform 1. [XP_007014028.1, Theobroma cacao]
GO: Biological Process: DNA-dependent transcription, termination (GO:0006353)
Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: RNA binding (GO:0003723)
InterPro: NusB/RsmB/TIM44 (IPR006027)
NusB antitermination factor (IPR011605)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.75,15.55,9.46,47.67,11.63,20.83,8.21,9.11
Arabidopsis thaliana homolog: AT4G26370.1
Automatic updates:
Name: NM_001255417 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max NUS1-like protein (LOC100809333), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:36618725..36618755 (+ strand)
Length: 31
Type: five_prime_UTR
Position: Chr01:36618756..36619048 (+ strand)
Length: 293
Type: CDS
Position: Chr01:36619157..36619233 (+ strand)
Length: 77
Type: CDS
Position: Chr01:36619884..36620018 (+ strand)
Length: 135
Type: CDS
Position: Chr01:36620933..36620987 (+ strand)
Length: 55
Type: CDS
Position: Chr01:36621154..36621241 (+ strand)
Length: 88
Type: CDS
Position: Chr01:36622667..36622765 (+ strand)
Length: 99
Type: CDS
Position: Chr01:36622879..36622992 (+ strand)
Length: 114
Type: CDS
Position: Chr01:36622993..36623205 (+ strand)
Length: 213
Type: three_prime_UTR


>Vigan.01G257000.01
ATTAAGATAT TTGCATTTAT CTTGTGTTGC AATGGAGGGA GTGTTGCTTC CTGTGTGTTC TTCCCCTTCA TCCTCTGCAA
CTCTTAAACC CAAAATCTCC ATTCCCCAAC GCTCTTCTTT TACTTCGTCA CTACCAACCC ACTGTTCCTT CCCTCAAAAC
GTAGCGTTTT CCCTTCGTAA CACTCTCCGA AGTTCCACCT CCGCACTCGC CCAGCACGAA GCTCCGGTTC TGGGAAAACC
CGACAACAAC TCCGTACCTG CTCTGCCCAA AATCGACAAG ACTGGGCGCT TCTGCAGCCC CAGAGCCGCG AGAGAACTCG
CACTCTCCAT TATTTATGCC GCATGTTTGG AGGGAATGGA CCCTGTTCGG CTTTTCGAGA AACGGATGAA TGCGCGGCGA
GAGGCCGGAT ATGAATTTGA CAAGAAAAAG TTGTTGGAGT ATAATCATAT GAGTTTTGGA GGGCCACCTG CTACTGTTGA
GTCGGATGAA GAGGCAAATG AGCTTCTGCG GCACATTGAA GAAGAGTCTG CCATTGAGGC AGAAGTCCTT ACAGCTCCAC
CAAGGTTGGT ATATAACAAC CTGATTTTGA GATTCACTAG GAAACTATTG GTTGCAGTCA GGGATACATG GGACAATCAT
GTCCTGGTTA TTAACAAGAT CGTCCCTGAA AATTGGAAGA ATGAACCAGC AGGAAAAATT TTAGAGCTTT GTATTCTTCA
CTTGGCCATG TCCGAAATGG CAGTGCTAGA AACAAGACAC CAAATCGTCA TTAATGAGGC TGTAGATCTT GCTAAACGGT
TTTGTGATGG AGCAGCCCCT CGTATCATTA ATGGCTGTCT CCGCACATTT TTCCGAGAAC TTGAGCTTCA GGAATCAAAT
AACCGAGTTT AGTTGTCTTT GGCTTATGGA AAAGGTTTCC TTGCATTTCA GGAATATCAG GTTTCGTAGC TTGCATATAG
AACGCTACTC AATGACTGAA ATAGGAACCT TGTTTGAAAA TTACTGTTAT TATGACATTG AAATAGTTAT AGTGTATATG
CTATTTTGTG TATTTTAGCA CGTGGGATTT GTATTAAATT TTTGACTAAA ATGTTAATTT CGTTC

>Vigan.01G257000.01
ATGGAGGGAG TGTTGCTTCC TGTGTGTTCT TCCCCTTCAT CCTCTGCAAC TCTTAAACCC AAAATCTCCA TTCCCCAACG
CTCTTCTTTT ACTTCGTCAC TACCAACCCA CTGTTCCTTC CCTCAAAACG TAGCGTTTTC CCTTCGTAAC ACTCTCCGAA
GTTCCACCTC CGCACTCGCC CAGCACGAAG CTCCGGTTCT GGGAAAACCC GACAACAACT CCGTACCTGC TCTGCCCAAA
ATCGACAAGA CTGGGCGCTT CTGCAGCCCC AGAGCCGCGA GAGAACTCGC ACTCTCCATT ATTTATGCCG CATGTTTGGA
GGGAATGGAC CCTGTTCGGC TTTTCGAGAA ACGGATGAAT GCGCGGCGAG AGGCCGGATA TGAATTTGAC AAGAAAAAGT
TGTTGGAGTA TAATCATATG AGTTTTGGAG GGCCACCTGC TACTGTTGAG TCGGATGAAG AGGCAAATGA GCTTCTGCGG
CACATTGAAG AAGAGTCTGC CATTGAGGCA GAAGTCCTTA CAGCTCCACC AAGGTTGGTA TATAACAACC TGATTTTGAG
ATTCACTAGG AAACTATTGG TTGCAGTCAG GGATACATGG GACAATCATG TCCTGGTTAT TAACAAGATC GTCCCTGAAA
ATTGGAAGAA TGAACCAGCA GGAAAAATTT TAGAGCTTTG TATTCTTCAC TTGGCCATGT CCGAAATGGC AGTGCTAGAA
ACAAGACACC AAATCGTCAT TAATGAGGCT GTAGATCTTG CTAAACGGTT TTGTGATGGA GCAGCCCCTC GTATCATTAA
TGGCTGTCTC CGCACATTTT TCCGAGAACT TGAGCTTCAG GAATCAAATA ACCGAGTTTA G

>Vigan.01G257000.01
MEGVLLPVCS SPSSSATLKP KISIPQRSSF TSSLPTHCSF PQNVAFSLRN TLRSSTSALA QHEAPVLGKP DNNSVPALPK
IDKTGRFCSP RAARELALSI IYAACLEGMD PVRLFEKRMN ARREAGYEFD KKKLLEYNHM SFGGPPATVE SDEEANELLR
HIEEESAIEA EVLTAPPRLV YNNLILRFTR KLLVAVRDTW DNHVLVINKI VPENWKNEPA GKILELCILH LAMSEMAVLE
TRHQIVINEA VDLAKRFCDG AAPRIINGCL RTFFRELELQ ESNNRV*