VIGGS:GBrowse

Vigan.01G258000.01

Basic Information:

Name:	Vigan.01G258000.01 Multiple alignment Variant Information
Position:	Chr01:36716390..36719416 (- strand)
Length:	3027

Functional Information:

Description:	Similar to Uncharacterized protein. [I1KMA9, Glycine max]
InterPro:	Lateral organ boundaries, LOB (IPR004883)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.42,5.75,1.69,0.27,9.12,0.41,16.38,5.21
Arabidopsis thaliana homolog:	AT1G31320.1

Automatic updates:

Name:	KT031096 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max clone HN_CCL_198 AS2 transcription factor (Glyma07g35000.1) mRNA, partial cds.
PubMed ID:	26268547 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001249822 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306560 (LOC100306560), transcript variant 1, mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001354003 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max LBD domain-containing transcription factor (LBD31), mRNA.
PubMed ID:	28464070 NCBI(pubmed)
PubMed ID:	26268547 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:36716390..36716938 (- strand)
Length:	549
Type:	three_prime_UTR

Position:	Chr01:36716939..36717265 (- strand)
Length:	327
Type:	CDS

Position:	Chr01:36719094..36719270 (- strand)
Length:	177
Type:	CDS

Position:	Chr01:36719271..36719416 (- strand)
Length:	146
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G258000.01
CCACCACCCT CTCTTTCTTT CTCTCTCTCA CACACACACG CCCTCTGTCT TTTCTTCCTT TTCTTTACTT TATTTTCAAC
TATAAATCCT TCTTTTGTTG CTCTACCATT CTCATGTCCT TTTAGAACTT TCAGAAGAAG GGAAACATGA AAGATGGAGG
TAGGAAGCAG GGTGCACCCT CACCCTGTGC TGCATGCAAG CTCCTTAGGA GAAGGTGTGC TCAGGATTGT GTTTTTGCTC
CTTATTTTCC TGCTGATGAA CCCCACAAGT TTGCCAATGT TCACAGAGTC TTTGGTGCCA GCAATGTCAA TAAGATGCTT
CAGGAGTTAC CAGAGCATCA GAGAGGAGAT GCAGTGAGCA GCATGGTGTA TGAGGCAAAT GCAAGAGTGA GGGACCCTGT
GTATGGGTGT GTGGGGGCCA TTTCATCTCT TCAGCAACAG ATTGATGTGT TGCAGACCCA ATTGGCAGTG GCTCAAGCCG
AAGCAGTGCA TCTCAGAGTG CGTCAGAATG CATCTCTCTA CAGCCCCACT AGCCCTACCA ACACTGCTTC TCCATCTTCC
AAGATCATTC ACTCACAACC CAAACCTATT TTTGACATCG ACATGGACAT GGTCGTCGAC CACACCACCT ACACTGATTC
AATCTGGTGA TCCATGCTAC CACCTCTTTT TATATTCTTA CTATTATATA ATACTTAGAC ACAAAACCTA TATCAGACTA
AAGTAATGCA TTCTCTATAC TTTTACTTTC ATCACTGCTA AAACAATGCC TTCTTTATTA TCGTTATAAA GTTTGTTGGA
AACCGCAAAA ATTTCACAGG TTTTTGTGAT TTCTAATGGA TTTTAAGCAA TAATAAGAAA TGTGTTAATG TTGAAAAGTG
ATTTCTCATT GTAGAATGGA AGTAGGGTTC TAGAAATAGT GGTGATTGCG GCGGTGGCGG TGAGAGCTGT GGCGGACACT
GTTCGCCCGC TTAATTAGTT TGGTTTGGAA AATAGATTTT TCTTGATTAC CTGTTGACAA TATATGTGGT GTATATATTA
TGGTTATGTG GTAAGGGACT TTTCTCCTGG ACAAAGGTTT CGTGGACTTT TATGTTGTTT TTCTGTGGTG CCCTATAGAC
ACATTGATTT TCATTTGTAC TACGTTGGGG CCTTCACTAT ATACAAGATA TCATTTTTAT GTTTTAGTAT CAATGTCGA

[show][hide][copy]CDS

>Vigan.01G258000.01
ATGAAAGATG GAGGTAGGAA GCAGGGTGCA CCCTCACCCT GTGCTGCATG CAAGCTCCTT AGGAGAAGGT GTGCTCAGGA
TTGTGTTTTT GCTCCTTATT TTCCTGCTGA TGAACCCCAC AAGTTTGCCA ATGTTCACAG AGTCTTTGGT GCCAGCAATG
TCAATAAGAT GCTTCAGGAG TTACCAGAGC ATCAGAGAGG AGATGCAGTG AGCAGCATGG TGTATGAGGC AAATGCAAGA
GTGAGGGACC CTGTGTATGG GTGTGTGGGG GCCATTTCAT CTCTTCAGCA ACAGATTGAT GTGTTGCAGA CCCAATTGGC
AGTGGCTCAA GCCGAAGCAG TGCATCTCAG AGTGCGTCAG AATGCATCTC TCTACAGCCC CACTAGCCCT ACCAACACTG
CTTCTCCATC TTCCAAGATC ATTCACTCAC AACCCAAACC TATTTTTGAC ATCGACATGG ACATGGTCGT CGACCACACC
ACCTACACTG ATTCAATCTG GTGA

[show][hide][copy]PROTEIN

>Vigan.01G258000.01
MKDGGRKQGA PSPCAACKLL RRRCAQDCVF APYFPADEPH KFANVHRVFG ASNVNKMLQE LPEHQRGDAV SSMVYEANAR
VRDPVYGCVG AISSLQQQID VLQTQLAVAQ AEAVHLRVRQ NASLYSPTSP TNTASPSSKI IHSQPKPIFD IDMDMVVDHT
TYTDSIW*