VIGGS:GBrowse

Vigan.01G260700.01

Basic Information:

Name:	Vigan.01G260700.01 Multiple alignment Variant Information
Position:	Chr01:37057024..37059335 (- strand)
Length:	2312

Functional Information:

Description:	Similar to uncharacterized protein. [B9G464, Oryza sativa subsp. japonica]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:5.90,7.01,4.12,2.08,12.62,9.23,10.73,3.19
Arabidopsis thaliana homolog:	AT2G04340.1

Automatic updates:

Name:	NM_001369193 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527894 (LOC100527894), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:37057024..37057391 (- strand)
Length:	368
Type:	three_prime_UTR

Position:	Chr01:37057392..37057475 (- strand)
Length:	84
Type:	CDS

Position:	Chr01:37058718..37058906 (- strand)
Length:	189
Type:	CDS

Position:	Chr01:37059041..37059271 (- strand)
Length:	231
Type:	CDS

Position:	Chr01:37059272..37059335 (- strand)
Length:	64
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G260700.01
TGAAGACATG ATGAATCGGC ACAGAGGGAT CCCCTTCCTT GTGTTGGATG AAAGGTAACC AAGGATGAAC GCATTGAAGT
GTAGATTATT GCACACTCTT CGTGGTGATG TGCCCACAGA AGCATTGAAG AGAAGAGCGT TGGAATTGGA GAAGAAAAGG
AAGATGAGGC AACCCAAGAG CAAGGACCAG TTTATCGTTA CAGTTCCCGA ATCCCTGTCT TACCTCGACA CCGCCACCAT
TCCCATGGTC GTCGCCGCCG TCGGAATCGC TCTACTCGCC AAACTCCTCA TGATGTATGA TGAATCTAAG TCCCAAGAGC
TGTTGGAGCG TAAAATAAAG AATGCTCCTG AAGGTCAAGG CACCGTTAGA ATGGTAACCC GAGAGGAGTG GGAGAAGTTC
CGAGAAATCA GGCCCAGAAC CCCGTTTGAG TCCACTTTTT CGCGCCCTAA TTCCAGAATA AGAACCGGAG AACCATTGCG
CATGGAGGAT GTAAAGGATT GGACAACTGA TGTTCTCATG GATGCTCTTC ACAGAGTAGA AGACTATGCT AAGCATGGTT
CTAAGTAATG TAACTAGTCC TCCTATTAAC CTCAAATTAC CCTTTGCTTT TTAATTTTAA TGCTTAGTAT AAAAATTTCC
AGTACTATTT GTTGTCTTGA TCTCAGCGAT GAGATGGCAT CGAATAATTT TGCAACTGTT ACCCATATCT TCACCAAGGA
AAATTGCTCT TTTTAGGCAA ACATGAATTA CAGAATGGCT CATATTTTGT TGTATCTTTG GCTGAACATG TTTTATGTAC
CAAAAATATA CAAGATAATT GCTGTATACG CTCATCATAG CAGAAACTTT GATCCGAAAA GTACCTAAAC ATGTAGTTGT
AGATACCGGT CTCATTCAGA AATAATGTAT TACTTGGTTG TTTTTGTATA TTACTG

[show][hide][copy]CDS

>Vigan.01G260700.01
ATGAACGCAT TGAAGTGTAG ATTATTGCAC ACTCTTCGTG GTGATGTGCC CACAGAAGCA TTGAAGAGAA GAGCGTTGGA
ATTGGAGAAG AAAAGGAAGA TGAGGCAACC CAAGAGCAAG GACCAGTTTA TCGTTACAGT TCCCGAATCC CTGTCTTACC
TCGACACCGC CACCATTCCC ATGGTCGTCG CCGCCGTCGG AATCGCTCTA CTCGCCAAAC TCCTCATGAT GTATGATGAA
TCTAAGTCCC AAGAGCTGTT GGAGCGTAAA ATAAAGAATG CTCCTGAAGG TCAAGGCACC GTTAGAATGG TAACCCGAGA
GGAGTGGGAG AAGTTCCGAG AAATCAGGCC CAGAACCCCG TTTGAGTCCA CTTTTTCGCG CCCTAATTCC AGAATAAGAA
CCGGAGAACC ATTGCGCATG GAGGATGTAA AGGATTGGAC AACTGATGTT CTCATGGATG CTCTTCACAG AGTAGAAGAC
TATGCTAAGC ATGGTTCTAA GTAA

[show][hide][copy]PROTEIN

>Vigan.01G260700.01
MNALKCRLLH TLRGDVPTEA LKRRALELEK KRKMRQPKSK DQFIVTVPES LSYLDTATIP MVVAAVGIAL LAKLLMMYDE
SKSQELLERK IKNAPEGQGT VRMVTREEWE KFREIRPRTP FESTFSRPNS RIRTGEPLRM EDVKDWTTDV LMDALHRVED
YAKHGSK*