GBrowse Details

Vigan.01G262800.01

Basic Information:
Name: Vigan.01G262800.01
Multiple alignment
Variant Information
Position: Chr01:37273477..37277217 (+ strand)
Length: 3741
Functional Information:
Description: Similar to cytochrome c6, chloroplastic-like isoform X1. [XP_003556673.1, Glycine max]
GO: Molecular Function: electron carrier activity (GO:0009055)
Molecular Function: heme binding (GO:0020037)
InterPro: Cytochrome c-like domain (IPR009056)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.16,0.40,4.25,13.56,0.52,2.60,1.29,1.85
Arabidopsis thaliana homolog: AT5G45040.1
Automatic updates:
Name: NM_001251451 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500456 (LOC100500456), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:37273477..37273558 (+ strand)
Length: 82
Type: five_prime_UTR
Position: Chr01:37273559..37273618 (+ strand)
Length: 60
Type: CDS
Position: Chr01:37273734..37273854 (+ strand)
Length: 121
Type: CDS
Position: Chr01:37276061..37276158 (+ strand)
Length: 98
Type: CDS
Position: Chr01:37276254..37276285 (+ strand)
Length: 32
Type: CDS
Position: Chr01:37276522..37276585 (+ strand)
Length: 64
Type: CDS
Position: Chr01:37276922..37277062 (+ strand)
Length: 141
Type: CDS
Position: Chr01:37277063..37277217 (+ strand)
Length: 155
Type: three_prime_UTR


>Vigan.01G262800.01
CATTTGTCAG GCTCTCCTTT GCAGACACAC TATCCAGTTT CAGTCGCGCG TCGAGCCCTT CTTATGCATC GAAACAAACG
AAATGAAAGT TGCTTCGTTG ATTTCTGGTT CCACTGATTA CACTCGCCTC TTCTCCATTA AGGACAATGC GATGAGGGAA
AAGAAGCCAA TTCTTGCATG GCAAGAACTG AAGTTCTTCA AGAGTTTGGC TCCTCCTCTT GTGGCTGCTT TTCTTGTCTT
ATCTCCAATT TGCACCACTC CACTTTCAAG TGCTCAAGCC GTAGATTTTC AGAGAGGAGC CACATTGTTT CGTCAAGCTT
GTATTGGATG TCACGATGCA GGTGGAAACA TAATACAACC GGGGTCAACT CTATTTACAA AGGATTTACA GAGAAATGGA
GTTGATACAG AAGAAGCGAT TTATCGTGTC ACTTACTATG GCAAAGGACG AATGCCAGGC TTTGGTAAAG AGTGCATGCC
ACGGGGTCAG TGCACATTCG GAGCTCGTTT GGAAGATGAA GATATCAAGA TATTGGCTCA GTTTGTCAAG TTGCAGGCTG
ATCAAGGGTG GCCAAGTATA GACACTCAAG AAAAGTGATT TAATTCATGT TTGGTTCCAC TTATTTGTAA AATATAACTG
TTTATTTCTT TTAACTTTTT TTTTTGAAAA CTTTTGAAAA TAAATTATTA TTTATGCAGT ATTAAGCTGA ACAAAACATG
TTGACATTCC CGTTAAACAA CAATGTTGCA AAA

>Vigan.01G262800.01
ATGAAAGTTG CTTCGTTGAT TTCTGGTTCC ACTGATTACA CTCGCCTCTT CTCCATTAAG GACAATGCGA TGAGGGAAAA
GAAGCCAATT CTTGCATGGC AAGAACTGAA GTTCTTCAAG AGTTTGGCTC CTCCTCTTGT GGCTGCTTTT CTTGTCTTAT
CTCCAATTTG CACCACTCCA CTTTCAAGTG CTCAAGCCGT AGATTTTCAG AGAGGAGCCA CATTGTTTCG TCAAGCTTGT
ATTGGATGTC ACGATGCAGG TGGAAACATA ATACAACCGG GGTCAACTCT ATTTACAAAG GATTTACAGA GAAATGGAGT
TGATACAGAA GAAGCGATTT ATCGTGTCAC TTACTATGGC AAAGGACGAA TGCCAGGCTT TGGTAAAGAG TGCATGCCAC
GGGGTCAGTG CACATTCGGA GCTCGTTTGG AAGATGAAGA TATCAAGATA TTGGCTCAGT TTGTCAAGTT GCAGGCTGAT
CAAGGGTGGC CAAGTATAGA CACTCAAGAA AAGTGA

>Vigan.01G262800.01
MKVASLISGS TDYTRLFSIK DNAMREKKPI LAWQELKFFK SLAPPLVAAF LVLSPICTTP LSSAQAVDFQ RGATLFRQAC
IGCHDAGGNI IQPGSTLFTK DLQRNGVDTE EAIYRVTYYG KGRMPGFGKE CMPRGQCTFG ARLEDEDIKI LAQFVKLQAD
QGWPSIDTQE K*