VIGGS:GBrowse

Vigan.01G263800.01

Basic Information:

Name:	Vigan.01G263800.01 Multiple alignment Variant Information
Position:	Chr01:37437802..37450720 (- strand)
Length:	12919

Functional Information:

Description:	Similar to Uncharacterized protein. [I1KM93, Glycine max]
GO:	Molecular Function: protein binding (GO:0005515)
InterPro:	Glutathione S-transferase, N-terminal (IPR004045)
	Glutathione S-transferase, C-terminal-like (IPR010987)
	Thioredoxin-like fold (IPR012336)
	Glutathione S-transferase (GST) (IPR016639)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:26.04,12.62,5.54,5.70,8.75,4.57,36.89,9.40
Arabidopsis thaliana homolog:	AT4G19880.2, AT5G45020.1

Automatic updates:

Name:	NM_001254025 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative glutathione S-transferase (LOC100813447), transcript variant 1, mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001361477 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative glutathione S-transferase (LOC100813447), transcript variant 2, mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001361478 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative glutathione S-transferase (LOC100813447), transcript variant 3, mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:37437802..37438619 (- strand)
Length:	818
Type:	three_prime_UTR

Position:	Chr01:37438620..37438853 (- strand)
Length:	234
Type:	CDS

Position:	Chr01:37449195..37449323 (- strand)
Length:	129
Type:	CDS

Position:	Chr01:37449419..37449643 (- strand)
Length:	225
Type:	CDS

Position:	Chr01:37449743..37449919 (- strand)
Length:	177
Type:	CDS

Position:	Chr01:37450016..37450228 (- strand)
Length:	213
Type:	CDS

Position:	Chr01:37450229..37450720 (- strand)
Length:	492
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G263800.01
GTTTTAAGAT GAGTTTTACA ATGCAGTAGC TATTATTGAA AGTTGTCTAA GATCACCGCC ACGCTTCAGA AGCGCCTTTC
CCTTCTCTGA CTTTTGTTAC AACTACTACC ACTACAAGGT GCGTTTCATC AACCAATCTC TCGTTTGCTC TCTTCATTTT
AGGTATGCAA TAGCCATGCT GCGAATTCTT CTATGTCTAA ACTGTTGATT CTTATGAAAA CTATCTGTTC TTTCTTTTCT
CTGCCAAGAA TTTTCTTACA CAGGATTACC AAATTAGTTT GTTGAAGAAT TATAATTGTA AGATAATCGT TACTACTACG
GTGTATGCTT ATTTGTGAAT TTCGAATCCT TTACGTATTT CTGTGTGGCT CGATGCATGG ATTACAACGA ATTTCTTGTT
GAACTAAATT TTGTTTTGCT CTATTCTTCA CTGGAGATTT ATTGCTGTTT GTGATTGGTT CGTAAAATAT CTTCTGTTAG
CTTCTTGTTG GGATGGCACA ATCTTCGATG GATGAGATAT CAGACACCGG AGCATTTGTG AGATCTGCTT CCACTTTCAG
AAACTGGATT TCAAGTGACC CGAATTCGCC ATTTCCACCG GAATCAGGGA GGTATCATCT CTATGTATCA TATGCTTGCC
CTTGGGCTTC CAGGTGCCTT GCTTACTTGA ATATCAAAGG ACTTAACAAA GCCATCAGTT TCTCGTCAGT CAAACCCATA
TTTGAAAGAA CTAAAGAATC AGATGAGTAT AAGGGGTGGG TTTTTCCTGA TTCAGAAACA GAGGTCCCTG GAGCTGAACC
TGATAGGTTG AATGGAGCAA AGAGTATTAG GGAGCTTTAT GAAATTGCAA GTGCTAACTA CACTGGAAAG TACACAGTTC
CTGTGTTGTG GGATAAGAAA CTCAAGACAA TTGTTAACAA CGAGAGCTCA GAGATAATCC GCATGTTTAA TACTGAATTC
AACAATATTG CAGAAAACCC CTCTGTTGAC TTGTATCCCG CTGATTTAAA AGCCCTTATT GATGAAACCA ATGAGTGGAT
ATACGATAGT ATAAATAATG GTGTTTACAA GTGTGGTTTT GCAAAGAAGC AAGAACCACA CAATGAGGCT TCAAGACAAT
TGTTTGAAGC TCTGGACAAA TGTGAGAATC TATTAAGTAA GCAACGCTAT ATATGTGGCT ACACACTCAC TGAAGCAGAC
ATTCGATTGT TTGTCACTCT TATCAGATTT GATGAGGTTT ATGCAGTTCA CTTCAAGTGC AACAAGAAGC TGCTGCACGA
ATACCCAAAT CTTTTCAATT ACACTAAAGA CATTTTCCAA ATTCCTGGCA TTAGTAGCAC TGTGAACATG CAACATATCA
AGTTACATTA CTATGGAAGT CATCCTTCTA TCAATCCATT TGGTATTGTT CCTGTTGGGC CAAATATTGA TTATTCTGCT
CCTCATGACA GAGAAAGGTT TTCTGCATAG GTGGTTGTTT TGTATAATTG TAAGATTTTT ATAGAATTTT CCTGTATTTT
CCAAGCTTTG TTGAAAAAGT GCAGAAACAA CGATGCTTTG TTGAAAAACG TAATTTCAAA ATAAACTGAG ACAGGTCTGT
GTGTGTGAGT ATACCTCTAA TGTTAGAATT CTTCTGTGAT CGAGCTTCAT TGATTTGTGT CAAAACTGTT TGAATTGTAG
CCAGACACAT CCCACAATTC GTATTACTGT CTTATTATTA AATGGCTTGG AAAGATCACC TGTATTTAGT GTTGAAATTT
GAGCTCGACA ACTTAGCTTG TTGGATCTCA TGTAGGGTCA GACTGCTTTG GATCTAAAAG AAAATGATAA AAGTGAGAGA
AACTAAGGTA CAGTGATAGA AACCTTTAGG AAAGAACTTG AAGAACAGAA ATTCACCTGG AAAGAGTATC ATATGATCAA
CTAGTTCTTG TTTTAGTTAT TATTATCAGC TGACATCAGA TATTATATAT CTGCAATTAA ATTGTACAAT TTTGTTTTTT
ACAAATAATA GAGATAACAG AGAATAGAGA AAATGTGGGT CATGTGATGG AAACATAGAA AGAGGGAGAG AAAAGAGTGG
CATTAAGCTG TTAGGAACTC TCTTCTCTCT TCCTTGTATC GCTCGTCTTA TTTTTCTTCT GTCCTTTTCT GTACTGAAAA
AGTTGTATAA TTTTTTTGTT ACTGAGTGAA AATTTGTAGT TTATGAGTTT GCTCTGTTCT GACATAATTT GTAACAGTGT
ATTAGCATAC TTCAAATCTA ATAGACTCTA AAGTCATGAT AGTATGGG

[show][hide][copy]CDS

>Vigan.01G263800.01
ATGGCACAAT CTTCGATGGA TGAGATATCA GACACCGGAG CATTTGTGAG ATCTGCTTCC ACTTTCAGAA ACTGGATTTC
AAGTGACCCG AATTCGCCAT TTCCACCGGA ATCAGGGAGG TATCATCTCT ATGTATCATA TGCTTGCCCT TGGGCTTCCA
GGTGCCTTGC TTACTTGAAT ATCAAAGGAC TTAACAAAGC CATCAGTTTC TCGTCAGTCA AACCCATATT TGAAAGAACT
AAAGAATCAG ATGAGTATAA GGGGTGGGTT TTTCCTGATT CAGAAACAGA GGTCCCTGGA GCTGAACCTG ATAGGTTGAA
TGGAGCAAAG AGTATTAGGG AGCTTTATGA AATTGCAAGT GCTAACTACA CTGGAAAGTA CACAGTTCCT GTGTTGTGGG
ATAAGAAACT CAAGACAATT GTTAACAACG AGAGCTCAGA GATAATCCGC ATGTTTAATA CTGAATTCAA CAATATTGCA
GAAAACCCCT CTGTTGACTT GTATCCCGCT GATTTAAAAG CCCTTATTGA TGAAACCAAT GAGTGGATAT ACGATAGTAT
AAATAATGGT GTTTACAAGT GTGGTTTTGC AAAGAAGCAA GAACCACACA ATGAGGCTTC AAGACAATTG TTTGAAGCTC
TGGACAAATG TGAGAATCTA TTAAGTAAGC AACGCTATAT ATGTGGCTAC ACACTCACTG AAGCAGACAT TCGATTGTTT
GTCACTCTTA TCAGATTTGA TGAGGTTTAT GCAGTTCACT TCAAGTGCAA CAAGAAGCTG CTGCACGAAT ACCCAAATCT
TTTCAATTAC ACTAAAGACA TTTTCCAAAT TCCTGGCATT AGTAGCACTG TGAACATGCA ACATATCAAG TTACATTACT
ATGGAAGTCA TCCTTCTATC AATCCATTTG GTATTGTTCC TGTTGGGCCA AATATTGATT ATTCTGCTCC TCATGACAGA
GAAAGGTTTT CTGCATAG

[show][hide][copy]PROTEIN

>Vigan.01G263800.01
MAQSSMDEIS DTGAFVRSAS TFRNWISSDP NSPFPPESGR YHLYVSYACP WASRCLAYLN IKGLNKAISF SSVKPIFERT
KESDEYKGWV FPDSETEVPG AEPDRLNGAK SIRELYEIAS ANYTGKYTVP VLWDKKLKTI VNNESSEIIR MFNTEFNNIA
ENPSVDLYPA DLKALIDETN EWIYDSINNG VYKCGFAKKQ EPHNEASRQL FEALDKCENL LSKQRYICGY TLTEADIRLF
VTLIRFDEVY AVHFKCNKKL LHEYPNLFNY TKDIFQIPGI SSTVNMQHIK LHYYGSHPSI NPFGIVPVGP NIDYSAPHDR
ERFSA*