GBrowse Details

Vigan.01G267800.01

Basic Information:
Name: Vigan.01G267800.01
Multiple alignment
Variant Information
Position: Chr01:38056053..38059191 (- strand)
Length: 3139
Functional Information:
Description: Similar to Uncharacterized protein. [I1NDA1, Glycine max]
InterPro: Phytanoyl-CoA dioxygenase (IPR008775)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:107.50,41.57,32.50,28.13,29.40,28.55,38.48,21.53
Arabidopsis thaliana homolog: AT2G01490.1
Automatic updates:
Name: NM_001255517 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phytanoyl-CoA dioxygenase domain-containing protein 1-like (LOC100788875), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:38056053..38056275 (- strand)
Length: 223
Type: three_prime_UTR
Position: Chr01:38056276..38056318 (- strand)
Length: 43
Type: CDS
Position: Chr01:38056698..38056784 (- strand)
Length: 87
Type: CDS
Position: Chr01:38056901..38057045 (- strand)
Length: 145
Type: CDS
Position: Chr01:38057143..38057290 (- strand)
Length: 148
Type: CDS
Position: Chr01:38058010..38058128 (- strand)
Length: 119
Type: CDS
Position: Chr01:38058548..38058616 (- strand)
Length: 69
Type: CDS
Position: Chr01:38058699..38058759 (- strand)
Length: 61
Type: CDS
Position: Chr01:38058850..38058974 (- strand)
Length: 125
Type: CDS
Position: Chr01:38059037..38059082 (- strand)
Length: 46
Type: CDS
Position: Chr01:38059083..38059191 (- strand)
Length: 109
Type: five_prime_UTR


>Vigan.01G267800.01
TAAGAAGGGA GTGCAATCCT ATGCCCATGG GTACCTGAGC AAGTACATTA CGACAACACT AAACATTGAA TCTTAAAAAT
TCGGTTTCTA AGCAAAATCA CTACACAAGA TGACCAAGCT TAGTTCCGAG CAGCTTCAAT TCTTCAACTC TCAAGGTTAT
CTTGTGATTG AATCGTTTGC AAGTGGCGAT GAGATCGAGT CCATGATGAA GACGATGGAG CAGTTGGTGG ATAAGTTTGA
TTATTCTTCC ACCGCTTCTA TTTTCTCCAC CAAGAACCAG CAACAGTTGA CTGATGATTA CTTTTTCGAT AGCGTGGAAA
GGGTTTCTTT TTTCTTTGAG GAAAAAGCAT TTGGTGATGA TGGCAATCTA AAGCAGCCGA AGCAACTCTC TATTAATAAA
GTTGGCCACG CTCTTCACGA GATTGAACCG GCATTCAAGA AGTTTTCTTC TTCTGAGAAA ATTTCAAGTT TGATGTACTC
CTTAGGTTAC AAGAGGCCTG TAGTCATGCA GTCTATGTAT ATATTTAAGC AACCAGGCAT TGGGGGTGAA GTAGTGCCAC
ACCAGGATAA CTCGTTTCTT TATACTGAAC CACAAACGTG CACAGGGTTG TGGTTGGCCC TAGAAGATGC AAATACATTA
AATGGTTGCC TTTGGGCGAT TCCTGGATCT CACAAAAACG GGCTTGTTAG AAGGTTCTTG AGAGATGAAG ATGGTGTCAA
ATTCGATCGA CCATCACCAT CTTATGATAA AAAAGATTTT GTTCCTATTG AAGTAAAAGC TGGTTCTATG GTTGTCATCC
ATGGTGATCT TATCCACCAA AGCTTTGAAA ACCAGTCTCC AAAATCAAGA CATGCCTACA GCTTGCATGT GGTGGACACC
GTGGGCTGCA CATGGGCACC AGAAAATTGG ATGAGACGAA AAGTGGAGCC TGAACCTCTC TTTGTGAGCT GACTTTCTGT
CGAATTCTCT TGCAGTTTAG TGTTTAATTT GCAAATATAA AGCATTGTAA TAATGTCAAC CTTCTTCTGG TTGCCACTGA
ACACACTACA TTCAACCTCT TTCCTTTCCT TTGGGATATT ATACCAATAT CATTAACAAA TATATTAGTA AACCCAATTA
TATTTTCCCA GTAATAATTT TTTATAATTT CAGTGTTTCT TTTATATAGT TTAAA

>Vigan.01G267800.01
ATGACCAAGC TTAGTTCCGA GCAGCTTCAA TTCTTCAACT CTCAAGGTTA TCTTGTGATT GAATCGTTTG CAAGTGGCGA
TGAGATCGAG TCCATGATGA AGACGATGGA GCAGTTGGTG GATAAGTTTG ATTATTCTTC CACCGCTTCT ATTTTCTCCA
CCAAGAACCA GCAACAGTTG ACTGATGATT ACTTTTTCGA TAGCGTGGAA AGGGTTTCTT TTTTCTTTGA GGAAAAAGCA
TTTGGTGATG ATGGCAATCT AAAGCAGCCG AAGCAACTCT CTATTAATAA AGTTGGCCAC GCTCTTCACG AGATTGAACC
GGCATTCAAG AAGTTTTCTT CTTCTGAGAA AATTTCAAGT TTGATGTACT CCTTAGGTTA CAAGAGGCCT GTAGTCATGC
AGTCTATGTA TATATTTAAG CAACCAGGCA TTGGGGGTGA AGTAGTGCCA CACCAGGATA ACTCGTTTCT TTATACTGAA
CCACAAACGT GCACAGGGTT GTGGTTGGCC CTAGAAGATG CAAATACATT AAATGGTTGC CTTTGGGCGA TTCCTGGATC
TCACAAAAAC GGGCTTGTTA GAAGGTTCTT GAGAGATGAA GATGGTGTCA AATTCGATCG ACCATCACCA TCTTATGATA
AAAAAGATTT TGTTCCTATT GAAGTAAAAG CTGGTTCTAT GGTTGTCATC CATGGTGATC TTATCCACCA AAGCTTTGAA
AACCAGTCTC CAAAATCAAG ACATGCCTAC AGCTTGCATG TGGTGGACAC CGTGGGCTGC ACATGGGCAC CAGAAAATTG
GATGAGACGA AAAGTGGAGC CTGAACCTCT CTTTGTGAGC TGA

>Vigan.01G267800.01
MTKLSSEQLQ FFNSQGYLVI ESFASGDEIE SMMKTMEQLV DKFDYSSTAS IFSTKNQQQL TDDYFFDSVE RVSFFFEEKA
FGDDGNLKQP KQLSINKVGH ALHEIEPAFK KFSSSEKISS LMYSLGYKRP VVMQSMYIFK QPGIGGEVVP HQDNSFLYTE
PQTCTGLWLA LEDANTLNGC LWAIPGSHKN GLVRRFLRDE DGVKFDRPSP SYDKKDFVPI EVKAGSMVVI HGDLIHQSFE
NQSPKSRHAY SLHVVDTVGC TWAPENWMRR KVEPEPLFVS *