GBrowse Details

Vigan.01G270400.01

Basic Information:
Name: Vigan.01G270400.01
Multiple alignment
Variant Information
Position: Chr01:38490548..38492888 (+ strand)
Length: 2341
Functional Information:
Description: Similar to uncharacterized LOC101202853. [XP_004170381.1, Cucumis sativus]
InterPro: Protein of unknown function DUF1068 (IPR010471)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.11,8.42,1.57,2.68,2.53,2.08,1.41,2.13
Arabidopsis thaliana homolog: AT1G05070.1
Automatic updates:
Name: NM_001248284 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306449 (LOC100306449), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:38490548..38490564 (+ strand)
Length: 17
Type: five_prime_UTR
Position: Chr01:38490565..38490754 (+ strand)
Length: 190
Type: CDS
Position: Chr01:38491436..38491459 (+ strand)
Length: 24
Type: CDS
Position: Chr01:38492217..38492563 (+ strand)
Length: 347
Type: CDS
Position: Chr01:38492564..38492888 (+ strand)
Length: 325
Type: three_prime_UTR


>Vigan.01G270400.01
GTGAGTTTGT GAGAGAGATG GGTTTGAATT GTGGCGGCGT TGTGGTGAGG TTTGGTTTGT GGGTGGCGGC GCTGTCCATT
GCGGGCTACA TAGTGGGTCC TCCTCTCTAC TGGCACCTCG TCGAACTCCT CAACCATTCT TCTTCTTCTT CTTGCACTCC
CTGTGTCTGT GATTGTTCTT CCCAACCCAT CATTTCCATT CCCCAATCGC TCAGCAACTC TTCATTTGAA GATTGTGCAA
AGCACGATCC AAAGGTGGAT GGAGACACCG AAAACAATGT TGCAGAGCTA CTGTCAGAAG AACTAAATCT CCGGGAAACT
GAAGCTTTGA AAAATCAGCG TCGTGCTGAC ATGGGTCTGC TGGAATCTAA GAAGATTGCA TCTCAGTATC AAAAAGAAGC
AGACAAGTGT AATTCAGGAA TGGAGACATG TGAGGAAGCC AGGGAAAAGG CTGAGATGGC CTTAGTGGCT CAGAAGAACC
TCTCTGCATT ATGGGAACTG AGAGCTCGTC ACAAAGGATG GCAAGAAGGG CTTGCCAAAT CTAATTCTCG CTCTAAAGGG
AAACTGCACT CTGCTTAGAC TGCACTGGCC TACATACTAC TTTCAAATGG AAGTTATATA TAGTTGGGGT AGTAGCCAAT
CATCATCATA GGTCCCTTAT AATTCTGGTA TATCCTTTAA GAGTCAAAAC TGTAAAATCC TAATACAAAT GTTGCTGTAT
TTCTAACCTC CATTTTTGGT ACTTACTATA TATTTAAGAC AGTTGAAAGC TGAGAAGTGT TAGGTTTTTT GTGACAAACT
TCTTACATAA CAAAATTGTG TGACTACTTG TTTCTGAAAG TTCTGGTTTG AAATCAATTC TGACTGTAGC TTATTCTGGA
AATATGGCAT TGAACTACAG AGA

>Vigan.01G270400.01
ATGGGTTTGA ATTGTGGCGG CGTTGTGGTG AGGTTTGGTT TGTGGGTGGC GGCGCTGTCC ATTGCGGGCT ACATAGTGGG
TCCTCCTCTC TACTGGCACC TCGTCGAACT CCTCAACCAT TCTTCTTCTT CTTCTTGCAC TCCCTGTGTC TGTGATTGTT
CTTCCCAACC CATCATTTCC ATTCCCCAAT CGCTCAGCAA CTCTTCATTT GAAGATTGTG CAAAGCACGA TCCAAAGGTG
GATGGAGACA CCGAAAACAA TGTTGCAGAG CTACTGTCAG AAGAACTAAA TCTCCGGGAA ACTGAAGCTT TGAAAAATCA
GCGTCGTGCT GACATGGGTC TGCTGGAATC TAAGAAGATT GCATCTCAGT ATCAAAAAGA AGCAGACAAG TGTAATTCAG
GAATGGAGAC ATGTGAGGAA GCCAGGGAAA AGGCTGAGAT GGCCTTAGTG GCTCAGAAGA ACCTCTCTGC ATTATGGGAA
CTGAGAGCTC GTCACAAAGG ATGGCAAGAA GGGCTTGCCA AATCTAATTC TCGCTCTAAA GGGAAACTGC ACTCTGCTTA
G

>Vigan.01G270400.01
MGLNCGGVVV RFGLWVAALS IAGYIVGPPL YWHLVELLNH SSSSSCTPCV CDCSSQPIIS IPQSLSNSSF EDCAKHDPKV
DGDTENNVAE LLSEELNLRE TEALKNQRRA DMGLLESKKI ASQYQKEADK CNSGMETCEE AREKAEMALV AQKNLSALWE
LRARHKGWQE GLAKSNSRSK GKLHSA*