GBrowse Details

Vigan.01G279200.01

Basic Information:
Name: Vigan.01G279200.01
Multiple alignment
Variant Information
Position: Chr01:39834919..39837678 (+ strand)
Length: 2760
Functional Information:
Description: Similar to Uncharacterized protein. [A5A6Y4, Glycine max]
InterPro: DnaJ domain (IPR001623)
DnaJ domain, conserved site (IPR018253)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:91.49,13.26,51.17,141.84,56.39,37.98,35.57,25.28
Arabidopsis thaliana homolog: AT4G13830.2
Automatic updates:
Name: NM_001248247 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max DnaJ-like protein (J1), mRNA.
PubMed ID: 19395413 NCBI(pubmed)
17497082 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:39834919..39835057 (+ strand)
Length: 139
Type: five_prime_UTR
Position: Chr01:39835058..39835471 (+ strand)
Length: 414
Type: CDS
Position: Chr01:39837299..39837448 (+ strand)
Length: 150
Type: CDS
Position: Chr01:39837449..39837678 (+ strand)
Length: 230
Type: three_prime_UTR


>Vigan.01G279200.01
CAAAATCCAA AACCAAAAAT AAAAGTAAAT AAATAATCAG AACCATATAA AATCGACAAG TCATAACGAG CAACAACACC
AAAACACAAG TAAGAGCGAG AGAAAAGCAG ATAGAAAGAT AATAAAAATA ATAATAATAA TGCGGTGTAA TGGTTTAACC
GTACACGGAA GCAACCACCG TGGCTTCTGC GTCCCCACCG TGTCTCCGGT GTTCTTGAGA CCCACCCGAC CCGTCACCCG
TATCGCGTTT CCCAAGGCTA GCCTGAAGAA CGAGGGACTA GTGATGGAGT TAAGCTTCTA CGAGCTTCTG GGTATACCCG
AATCCGGTTC CTTGATGGAG ATCAAGAACG CGTACAAGCA ACTCGCCCGA AAGTACCACC CGGATGTGTC TCCTCCGGGT
CGGGTGGAGG AATACACCAA ACGGTTTATT CAGGTGCAGG AAGCCTACGA AACTCTCTCC GATCCTTCCC GAAGAGCCAT
GTACGATCAC GACATGGCTA AAGGTATTAA CTTCGCTTTC AACGCCCGCA GACGCCGCAA TTACCACGAT CAGGTGGTGG
AACAAAAAAC TGAATGGAAA TCTCGGTGGC AATCTCAACT GTCGGAGCTG AAGAGAAGAA GTAACAGCAA GGAGGGTGGA
GGGAATATGT CATGGGCAGC GAGAATGCGC CAGCAGAGGG ATGAATTGGC TAATGAATCA TGACTAGGAC GTAACTAATT
GTATATATAC ATATATATGA TAGATGTGTA CATCTCCGAA CTCTAGATCA AATCAGATAT ATAATATGAA TCATGAGAAA
ATGTGCCATT GCTGAAACAA AAGTTTGCGA CTCTAGGCCA TTTTAATGAA CATTTGCAAA AATAATTTTG AAGTAAAGTT
TTTTGCATTT ATTTTATTTA TTTATTCTGA AAGTAAATTA GTAGACAAAT TCA

>Vigan.01G279200.01
ATGCGGTGTA ATGGTTTAAC CGTACACGGA AGCAACCACC GTGGCTTCTG CGTCCCCACC GTGTCTCCGG TGTTCTTGAG
ACCCACCCGA CCCGTCACCC GTATCGCGTT TCCCAAGGCT AGCCTGAAGA ACGAGGGACT AGTGATGGAG TTAAGCTTCT
ACGAGCTTCT GGGTATACCC GAATCCGGTT CCTTGATGGA GATCAAGAAC GCGTACAAGC AACTCGCCCG AAAGTACCAC
CCGGATGTGT CTCCTCCGGG TCGGGTGGAG GAATACACCA AACGGTTTAT TCAGGTGCAG GAAGCCTACG AAACTCTCTC
CGATCCTTCC CGAAGAGCCA TGTACGATCA CGACATGGCT AAAGGTATTA ACTTCGCTTT CAACGCCCGC AGACGCCGCA
ATTACCACGA TCAGGTGGTG GAACAAAAAA CTGAATGGAA ATCTCGGTGG CAATCTCAAC TGTCGGAGCT GAAGAGAAGA
AGTAACAGCA AGGAGGGTGG AGGGAATATG TCATGGGCAG CGAGAATGCG CCAGCAGAGG GATGAATTGG CTAATGAATC
ATGA

>Vigan.01G279200.01
MRCNGLTVHG SNHRGFCVPT VSPVFLRPTR PVTRIAFPKA SLKNEGLVME LSFYELLGIP ESGSLMEIKN AYKQLARKYH
PDVSPPGRVE EYTKRFIQVQ EAYETLSDPS RRAMYDHDMA KGINFAFNAR RRRNYHDQVV EQKTEWKSRW QSQLSELKRR
SNSKEGGGNM SWAARMRQQR DELANES*